RetrogeneDB ID:

retro_macu_40

Retrocopy
location
Organism:Wild banana (Musa acuminata)
Coordinates:2:6371845..6372204(+)
Located in intron of:None
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:None
Ensembl ID:GSMUA_Achr6G25970_001
Aliases:None
Description:None


Retrocopy-Parental alignment summary:






>retro_macu_40
ATGGCACTAAGTTTCAGTTGCCTTAGGATGGCCACGAACATTCCATCGTCTGCATACAAGCCCATGCACGAGTATTGAAT
TCTTCGAGTTAGTAATTCCCCTCACCTCTATGAGCTTTGCATAACTCTTTCGGTCGTTGGGCAACTCATTCCACCTTGCA
TGGTCTCATCCTTTACCAAGCGCCTCACTCGCCTTGAGCACCATTAAGTATAGTTGTCAACGTCGAGCCGTAGCTTGAAC
TCAACCATCCCAACCTTTGTGCGCTCTGTATTCTTCCCAGCTTGTTTGTTCTCGTGGTGCCTCTTGCATGAAGGGTTGGC
CATTCCTCTGAATGCCACTCTCAGATGCCCGCTCCTCTG

ORF - retro_macu_40 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 53.66 %
Parental protein coverage: 63.21 %
Number of stop codons detected: 4
Number of frameshifts detected 1


Retrocopy - Parental Gene Alignment:

ParentalMASSFSLLGTATDSPSFAYKPLHEYLILQVSNSSHLCELCTTLKVAKQPIPPCMVLFFAKCPACLEHHQV
MA.SFS.L..AT..PS.AYKP.HEY.IL.VSNS.HL.ELC.TL.V..Q.IPPCMV..F.K....LEHH.V
RetrocopyMALSFSCLRMATNIPSSAYKPMHEY*ILRVSNSPHLYELCITLSVVGQLIPPCMVSSFTKRLTRLEHH*V
ParentalWLPMLSYCSNSTIITFVSYVSFLVPSLL-VFVVPITRRGANTSDFNRHSGARL
.L...S...NSTI.TFV..V.F..P..L.V.VVP...R....S.......A.L
Retrocopy*LSTSSRSLNSTIPTFVRSVFF--PACL<VLVVPLA*RVGHSSECHSQMPAPL

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






Musa acuminata was not studied using RNA-Seq expression data.
Musa acuminata was not studied using ChIP-Seq data.
Musa acuminata was not studied using EST data.
Musa acuminata was not studied using FANTOM5 data.
retro_macu_40 was not experimentally validated.

Retrocopy orthology:
Musa acuminata does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

Parental genes homology:
Parental genes homology involve 1 parental gene, and 33 retrocopies.

Species Parental gene accession Retrocopies number
Musa acuminata GSMUA_Achr6G25970_001 33 retrocopies



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