RetrogeneDB ID:

retro_macu_86

Retrocopy
location
Organism:Wild banana (Musa acuminata)
Coordinates:9:30555796..30556155(+)
Located in intron of:None
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:None
Ensembl ID:GSMUA_Achr6G25970_001
Aliases:None
Description:None


Retrocopy-Parental alignment summary:






>retro_macu_86
ATGGCGCCGAGTTCCGGTCGCTTTGGGATGGCCACGAATAGTCCATCGTCCGCATACAAGCCCTTGCATGAGTACCAAAT
TCTTTGAGCTAGCAATTCCCCTCACCTCTGTGAGCTTTGCACAACTCTTTCGGTCGCCGAACAACTCATTCCACCTTGCA
TGGTCTCGTCCTTTACCAAGCGCCTCGCTTGCCTTGAGCACCATCAAGTGTTGTTGTCAACGTCGAGCCGTAGCTCGAAC
TCAGCTATCCCAACCTTTGTGCGCTCCGCATTCTTCCCAGCTTGTTTGTCCTCGTGGTGCCTCTTGCGCGAAGGGTTGGC
CATTCCTCTGAATGCCAATCTCGGATGTCCGCTCCTCTG

ORF - retro_macu_86 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 57.72 %
Parental protein coverage: 63.21 %
Number of stop codons detected: 1
Number of frameshifts detected 1


Retrocopy - Parental Gene Alignment:

ParentalMASSFSLLGTATDSPSFAYKPLHEYLILQVSNSSHLCELCTTLKVAKQPIPPCMVLFFAKCPACLEHHQV
MA.S....G.AT.SPS.AYKPLHEY.IL..SNS.HLCELCTTL.VA.Q.IPPCMV..F.K..ACLEHHQV
RetrocopyMAPSSGRFGMATNSPSSAYKPLHEYQIL*ASNSPHLCELCTTLSVAEQLIPPCMVSSFTKRLACLEHHQV
ParentalWLPMLSYCSNSTIITFVSYVSFLVPSLL-VFVVPITRRGANTSDFNRHSGARL
.L...S..SNS.I.TFV....F..P..L.V.VVP..RR....S.......A.L
RetrocopyLLSTSSRSSNSAIPTFVRSAFF--PACL<VLVVPLARRVGHSSECQSRMSAPL

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






Musa acuminata was not studied using RNA-Seq expression data.
Musa acuminata was not studied using ChIP-Seq data.
Musa acuminata was not studied using EST data.
Musa acuminata was not studied using FANTOM5 data.
retro_macu_86 was not experimentally validated.

Retrocopy orthology:
Musa acuminata does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

Parental genes homology:
Parental genes homology involve 1 parental gene, and 33 retrocopies.

Species Parental gene accession Retrocopies number
Musa acuminata GSMUA_Achr6G25970_001 33 retrocopies



Copyright © RetrogeneDB 2014-2017