RetrogeneDB ID: | retro_mdom_1416 | ||
Retrocopylocation | Organism: | Opossum (Monodelphis domestica) | |
Coordinates: | 4:370091206..370091818(-) | ||
Located in intron of: | ENSMODG00000009913 | ||
Retrocopyinformation | Ensembl ID: | ENSMODG00000009970 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | AAGAB | ||
Ensembl ID: | ENSMODG00000009585 | ||
Aliases: | None | ||
Description: | alpha- and gamma-adaptin binding protein [Source:HGNC Symbol;Acc:25662] |
Percent Identity: | 95.1 % |
Parental protein coverage: | 64.97 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | ILVCDRVSENGVSRPRAQEWCIQHGFELVELNPEELPEEDDDFPESTGVKRIVQALNANVWSNVVMKSER |
ILVCDRVSENGV.RPRAQEW.IQHGFELVELNPEELPEEDDDFPESTGVKRIVQALNANVWSNVVMKSER | |
Retrocopy | ILVCDRVSENGVRRPRAQEWRIQHGFELVELNPEELPEEDDDFPESTGVKRIVQALNANVWSNVVMKSER |
Parental | NQSFGLLSSLAGANCNIGSTENHHTEPCMPVGDRAESCFDHQDSASNTADAQVDSIVDPMLDLDIQELAS |
NQSFGLLSSLAGANCNIGSTENH.TEPCMPVGDRA.SCFD.QDSASN.ADAQV.SIVDPMLDLDIQELAS | |
Retrocopy | NQSFGLLSSLAGANCNIGSTENHQTEPCMPVGDRAKSCFDYQDSASNIADAQVNSIVDPMLDLDIQELAS |
Parental | LTTGGGDLENFERLFSKLKEMKDKAATLPHEQRKLHAEKVAKAFWMAIGGDRDEIEGISSDEEN |
LTTGGGDLEN.ERLFSKLKEMKDKA.TLPHEQRKL.AEKVAKAFWMAIGGDRDEIEGISSDEEN | |
Retrocopy | LTTGGGDLENLERLFSKLKEMKDKAVTLPHEQRKLNAEKVAKAFWMAIGGDRDEIEGISSDEEN |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .00 RPM | 101 .91 RPM |
SRP007412_cerebellum | 0 .00 RPM | 111 .32 RPM |
SRP007412_heart | 0 .00 RPM | 85 .92 RPM |
SRP007412_kidney | 0 .00 RPM | 171 .19 RPM |
SRP007412_liver | 0 .00 RPM | 76 .03 RPM |
SRP007412_testis | 0 .00 RPM | 106 .47 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Bos taurus | ENSBTAG00000040368 | 1 retrocopy | |
Canis familiaris | ENSCAFG00000017414 | 1 retrocopy | |
Monodelphis domestica | ENSMODG00000009585 | 1 retrocopy |
retro_mdom_1416 ,
|
Rattus norvegicus | ENSRNOG00000008424 | 2 retrocopies |