RetrogeneDB ID: | retro_mdom_1646 | ||
Retrocopylocation | Organism: | Opossum (Monodelphis domestica) | |
Coordinates: | 6:37837289..37837876(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | PACRGL | ||
Ensembl ID: | ENSMODG00000000641 | ||
Aliases: | None | ||
Description: | PARK2 co-regulated-like [Source:HGNC Symbol;Acc:28442] |
Percent Identity: | 78.17 % |
Parental protein coverage: | 75.38 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 1 |
Parental | SGANSKKTRMQKSESHGSLQMRNRVTGNYEQRISSGSQEKHR-SVVHQNKLLPSKNSPDSVRKPHPRPSD |
SGAN.KK.R.QKSES..SLQ.RNR.TG.YEQR.SSGSQEKH..SV.HQNKLL..KNSPD.VRKPHP...D | |
Retrocopy | SGANTKKARIQKSESSESLQTRNRETGKYEQRLSSGSQEKHN<SVFHQNKLLLFKNSPDFVRKPHPPQND |
Parental | KLNPKTIDPFGDQPRAPSAFAAIYSKGGIPCRLVHGSVKHKLQWDCLPETLPFDPLLITLAEGLRETKHP |
KLNPKT.DPF.DQP...S.FAA.YSKGGIPCRLVH.S.KHKLQWDCLPETL.F..LLITL.E.LR.TK.P | |
Retrocopy | KLNPKTVDPFCDQPQTLSTFAAVYSKGGIPCRLVHHSIKHKLQWDCLPETL*FETLLITLVEDLRDTKYP |
Parental | YTFVSKEGFKELLLVEGATEKTVPLLPRLIPVLKAALTHSDGEVFERGLNALVQLSG |
YTFVS.EGFKELLLVEG.TEKTV.L..RLIPVLKAALTHSDGEVFE.GLN.L.Q.SG | |
Retrocopy | YTFVSREGFKELLLVEGVTEKTVSLISRLIPVLKAALTHSDGEVFEWGLNVLIQ*SG |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .00 RPM | 0 .00 RPM |
SRP007412_cerebellum | 0 .00 RPM | 0 .00 RPM |
SRP007412_heart | 0 .00 RPM | 0 .00 RPM |
SRP007412_kidney | 0 .00 RPM | 0 .00 RPM |
SRP007412_liver | 0 .00 RPM | 0 .00 RPM |
SRP007412_testis | 0 .00 RPM | 0 .00 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Dipodomys ordii | ENSDORG00000015625 | 1 retrocopy | |
Homo sapiens | ENSG00000163138 | 1 retrocopy | |
Gorilla gorilla | ENSGGOG00000012603 | 1 retrocopy | |
Macropus eugenii | ENSMEUG00000009937 | 2 retrocopies | |
Monodelphis domestica | ENSMODG00000000641 | 2 retrocopies |
retro_mdom_1541, retro_mdom_1646 ,
|
Oryctolagus cuniculus | ENSOCUG00000002186 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000015945 | 1 retrocopy | |
Rattus norvegicus | ENSRNOG00000004140 | 1 retrocopy | |
Tarsius syrichta | ENSTSYG00000001584 | 1 retrocopy |