RetrogeneDB ID: | retro_meug_106 | ||
Retrocopylocation | Organism: | Wallaby (Macropus eugenii) | |
Coordinates: | GeneScaffold_2724:40640..41043(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | CHMP2B | ||
Ensembl ID: | ENSMEUG00000012195 | ||
Aliases: | None | ||
Description: | charged multivesicular body protein 2B [Source:HGNC Symbol;Acc:24537] |
Percent Identity: | 75.18 % |
Parental protein coverage: | 62.56 % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 2 |
Parental | MACLFKKKTVDDVIKEQNRELRGTQRAIMRDRAALEKQEKQLKLEIKKMAKI-GNKEVCRVLPKQLVQLR |
MA.LFK.KTV.DVIKEQN.EL...QRAIMRD.AALEKQEK.L.LEIKKM.KI..NKE.CR.L.KQLVQLR | |
Retrocopy | MASLFKEKTVNDVIKEQNQEL*VAQRAIMRD*AALEKQEKHLELEIKKMVKI<YNKEACRILAKQLVQLR |
Parental | KQKTRTFA-VSSKVTSMST-AKVMDSQMKMATVMSTTAKTMQAINKKMDPQKTLQT-RTFQ-ENMKM |
K.KTRTFA..SSKVTS..T.AKV..SQMKM....STTAKTMQA.NKKM.PQKT.QT.R.FQ.ENMKM | |
Retrocopy | K*KTRTFA<LSSKVTSTCTQAKVRKSQMKMVGAVSTTAKTMQAVNKKMEPQKTSQTMRNFQKENMKM |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Choloepus hoffmanni | ENSCHOG00000006615 | 2 retrocopies | |
Macropus eugenii | ENSMEUG00000012195 | 1 retrocopy |
retro_meug_106 ,
|
Macropus eugenii | ENSMEUG00000013531 | 1 retrocopy | |
Myotis lucifugus | ENSMLUG00000009052 | 1 retrocopy | |
Monodelphis domestica | ENSMODG00000016939 | 2 retrocopies | |
Ictidomys tridecemlineatus | ENSSTOG00000011456 | 1 retrocopy |