RetrogeneDB ID: retro_mluc_1557

Retrocopy location

• Organism: Microbat (Myotis lucifugus)
• Coordinates: GL429861:3126798..3127277(-)
• Located in intron of: ENSMLUG00000007362

Retrocopy information

• Ensembl ID: ENSMLUG00000026937
• Aliases: None
• Status: KNOWN_PSEUDOGENE

Parental gene information

• Parental gene symbol: CHMP2B
• Ensembl ID: ENSMLUG00000009052
• Aliases: None
• Description: None

Sequence

>retro_mluc_1557
GAATTGAGAGTTACGAGAAGGCTATAAACAGAGATGAAGCAGCATTAGAGAAACAAAAAAAACAGGTAAATTCAGAAATT
AAGAAAATGGCCAAAATTGGTAATAAAGAAGCTTTCAGTTTTAGCCAAAGAGCCTGCACAACTATGGAAACAGCAAACAG
GAACTTTTGCCCCAAGTACAAAAGTCATTTCTACATCCACACAAACAAAAGTGATAAATTCCCAGATGAAGATGGCTGCA
CAATGTCTGCTATAGCAAAGACAACGTAGGCAGTTGACAAGAAGATGAAATTACAAACAATGCAGAATTTCCAGTCGGAA
AATATGGAAATGACTGAAGAAATGATTGGTGACACACCTGAGGACATCTTTGATGGCTCTGATGATGAAGAAGAAAGCCA
AGATACTATGAATCAAGTTCTTGATGAAATTGGAATTGAAATTTCTGGAAATATGGCCAAAGCTGTCAGCTCTCTGAAG

Alignment

ORF - retro_mluc_1557 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 62.94 %
• Parental protein coverage: 78.4 %
• Number of stop codons detected: 1
• Number of frameshifts detected: 3

Retrocopy - Parental Gene Alignment:

Parental  ELRGTQR-AISRDRAALERQEKQLELE-IKKMAKIGNREACRVLAKQLVQLRKQKTRTFAVSSKVTSMST
          ELR.T.R.AI.RD.AALE....Q...E...K..K........VLAK...QL.KQ.T.TFA.S.KV.S.ST
Retrocopy ELRVTRR<AINRDEAALEKXXXQVNSE>LRKWPKLVIKKLS-VLAKEPAQLWKQQTGTFAPSTKVISTST

Parental  QTKVMNSQMKMAG-AMSTTAKTMQAVNKKVDPQKTLQTMQNFQKENMKMEMTEEMINDTLDDIFDGSDDE
          QTKV.NSQMKMA...MS..AKT..AV.KK......LQTMQNFQ.ENM..EMTEEMI.DT..DIFDGSDDE
Retrocopy QTKVINSQMKMAA<TMSAIAKTT*AVDKKMK----LQTMQNFQSENM--EMTEEMIGDTPEDIFDGSDDE

Parental  EESQDIVNQVLDEIGIEISGKMAKAPSAAR
          EESQD..NQVLDEIGIEISG.MAKA.S...
Retrocopy EESQDTMNQVLDEIGIEISGNMAKAVSSLK

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Myotis lucifugus was not studied using RNA-Seq expression data.

ChIP-Seq

Myotis lucifugus was not studied using ChIP-Seq data.

EST

Myotis lucifugus was not studied using EST data.

TSS

Myotis lucifugus was not studied using FANTOM5 data.

Lab

retro_mluc_1557 was not experimentally validated.

Homology

Retrocopy orthology:

Myotis lucifugus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 5 parental genes, and 7 retrocopies.

Species	Parental gene accession	Retrocopies number
Choloepus hoffmanni	ENSCHOG00000006615	2 retrocopies	retro_chof_2662, retro_chof_309,
Macropus eugenii	ENSMEUG00000012195	1 retrocopy	retro_meug_106,
Myotis lucifugus	ENSMLUG00000009052	1 retrocopy	retro_mluc_1557 ,
Monodelphis domestica	ENSMODG00000016939	2 retrocopies	retro_mdom_522, retro_mdom_605,
Ictidomys tridecemlineatus	ENSSTOG00000011456	1 retrocopy	retro_itri_1036,