RetrogeneDB ID: | retro_meug_1167 | ||
Retrocopylocation | Organism: | Wallaby (Macropus eugenii) | |
Coordinates: | Scaffold312523:889..1293(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | PQLC3 | ||
Ensembl ID: | ENSMEUG00000009376 | ||
Aliases: | None | ||
Description: | PQ loop repeat containing 3 [Source:HGNC Symbol;Acc:28503] |
Percent Identity: | 86.03 % |
Parental protein coverage: | 66.5 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 1 |
Parental | EYPILIAQDVVLLLCIFHYNGGMNLAIPHIVILLGGWYILTLQKWITDLAMNLCTFTSAASKFAQLQYLW |
EYPI.IAQDVVLLLCIFHYNGGM.LAIPHIVILLGGWYILTLQKWITDLAMNLCTFTSAASKFAQLQYLW | |
Retrocopy | EYPIFIAQDVVLLLCIFHYNGGMKLAIPHIVILLGGWYILTLQKWITDLAMNLCTFTSAASKFAQLQYLW |
Parental | EARDSGAVSALTWSMSAYTCAXXXXXXXXXXXXXXXLVR-FLIMLALNIWVTATILRYRKTTTKDE |
EARDSGAVSALTWSMSAYTCA...............LVR.FLIMLALNIWVTATIL.YRKTTTKDE | |
Retrocopy | EARDSGAVSALTWSMSAYTCATRVVTTLMTSQDLMVLVR<FLIMLALNIWVTATILLYRKTTTKDE |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Choloepus hoffmanni | ENSCHOG00000006017 | 3 retrocopies | |
Callithrix jacchus | ENSCJAG00000006801 | 1 retrocopy | |
Dasypus novemcinctus | ENSDNOG00000015960 | 1 retrocopy | |
Macropus eugenii | ENSMEUG00000009376 | 1 retrocopy |
retro_meug_1167 ,
|
Mus musculus | ENSMUSG00000045679 | 2 retrocopies |