RetrogeneDB ID: | retro_meug_1171 | ||
Retrocopylocation | Organism: | Wallaby (Macropus eugenii) | |
Coordinates: | Scaffold31400:5556..6023(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | HAUS2 | ||
Ensembl ID: | ENSMEUG00000003587 | ||
Aliases: | None | ||
Description: | HAUS augmin-like complex, subunit 2 [Source:HGNC Symbol;Acc:25530] |
Percent Identity: | 65.82 % |
Parental protein coverage: | 76.47 % |
Number of stop codons detected: | 4 |
Number of frameshifts detected | 2 |
Parental | QKTLEIDLLTLEKDTADVVHPFFLAQKCETLQSMNQHLETVLKEK-RALRQRLMKPLCQENLPIEAIYHR |
.KTLE.D.LTLEKDT..V.HPF.LAQKCE..QSMN.HLETVLKEK.R.L...LMK.LCQ.NLPI.AIYHR | |
Retrocopy | EKTLETDFLTLEKDTTNVIHPFYLAQKCEAVQSMNWHLETVLKEK>RFL*H*LMKALCQ-NLPIGAIYHR |
Parental | YVVQLLELAVTFIEKLEAHIEAIRNIPCLNSSVKNMDRALTKMSVLEGETEELIE-NILKWKEHQKEISS |
YV..LL.L..TF.EKLEAHIE.IRNIPCL..SVK.MD..L.K..VL.G.TEE..E.NILK..E..K.IS. | |
Retrocopy | YVIHLLDLPLTFFEKLEAHIEDIRNIPCLDCSVKSMDSTLSKIRVLSGKTEEVKE>NILK*REQ*KQISH |
Parental | SITKIFSGSLQKKPATII |
.ITKIFSG....K..... | |
Retrocopy | FITKIFSGEIFRKSMRLL |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Macropus eugenii | ENSMEUG00000003587 | 4 retrocopies | |
Microcebus murinus | ENSMICG00000000819 | 1 retrocopy | |
Monodelphis domestica | ENSMODG00000017882 | 1 retrocopy | |
Oryctolagus cuniculus | ENSOCUG00000011004 | 1 retrocopy | |
Sorex araneus | ENSSARG00000001275 | 2 retrocopies | |
Ictidomys tridecemlineatus | ENSSTOG00000006207 | 1 retrocopy | |
Vicugna pacos | ENSVPAG00000006260 | 1 retrocopy |