RetrogeneDB ID: | retro_meug_1231 | ||
Retrocopylocation | Organism: | Wallaby (Macropus eugenii) | |
Coordinates: | Scaffold33424:3113..3728(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | HAUS2 | ||
Ensembl ID: | ENSMEUG00000003587 | ||
Aliases: | None | ||
Description: | HAUS augmin-like complex, subunit 2 [Source:HGNC Symbol;Acc:25530] |
Percent Identity: | 87.32 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 0 |
Parental | ETLDSCKDPAPFFVNFSRIKQIKDLQAEIRQKTLEIDLLTLEKDTADVVHPFFLAQKCETLQSMNQHLET |
ETLD..KDPA.FFVNFSRIK..KDLQAEIRQKTLEIDLLTLEKDTADVVHPFFLAQKCETLQSMNQHLET | |
Retrocopy | ETLD*YKDPASFFVNFSRIK*FKDLQAEIRQKTLEIDLLTLEKDTADVVHPFFLAQKCETLQSMNQHLET |
Parental | VLKEKRALRQRLMKPLCQENLPIEAIYHRYVVQLLELAVTFIEKLEAHIEAIRNIPCLNSSVKNMDRALT |
VLKEKRALRQRLMKPLCQENLPIEAIYHRYVVQLLELAVTFIEK.E.HIEAI.NIPCLNSSVK.MDR.LT | |
Retrocopy | VLKEKRALRQRLMKPLCQENLPIEAIYHRYVVQLLELAVTFIEKPESHIEAI*NIPCLNSSVKSMDRSLT |
Parental | KMSVLEGETEELIENILKWKEHQKEISSSITKIFSGSLQKKPA-TIIPHLPFQSRTQGQLILDIK |
KMSVLEGETEELIENILKWKE.QKEISSSI.KIFSG.L....A....P...F..RTQGQLILDIK | |
Retrocopy | KMSVLEGETEELIENILKWKEQQKEISSSIAKIFSGDLFXXXARDCNPSSNFPFRTQGQLILDIK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Macropus eugenii | ENSMEUG00000003587 | 4 retrocopies | |
Microcebus murinus | ENSMICG00000000819 | 1 retrocopy | |
Monodelphis domestica | ENSMODG00000017882 | 1 retrocopy | |
Oryctolagus cuniculus | ENSOCUG00000011004 | 1 retrocopy | |
Sorex araneus | ENSSARG00000001275 | 2 retrocopies | |
Ictidomys tridecemlineatus | ENSSTOG00000006207 | 1 retrocopy | |
Vicugna pacos | ENSVPAG00000006260 | 1 retrocopy |