>retro_meug_1205
GAGATCTTTGAACTGAAGGCGGAGCTCAGCAACGAAAAGAAGGAGAAAAGGAAAGAAGCTATCAAGAAAGTGATTGCAGT
CATGACAGTGGGGAAGGATGCCAGCTCTCTCTTTCCAGATGTGGTGAATTGTGTGCAAATGGATAACCTGGAGCTAAAGA
AGCTTGTCTATCTATATCTGATGAACTATGCCAAGAGCCAGCCAGATATGGCCATCATGACTGTCAACAACTTTGTGAAG
GACTGTGAAGACCCTAACCCATTAATCTGTGCCCTGGCATTCAGGACTATGGGGTGTATTTGGGTGGACAAGATCACAAA
GTATCTCTGTGAGCCACTTCTCAAATGTCTGAACGATGAAGATCCTTATGTCCAAAAGACGGCAGCAGTCTGTGTGGCCA
AGCTGCACAACATCAATGCCCAGATGGTGGAGGACCAAGGCTCCTTGGATTCTCCTCGGGATCTCATTGCAGACTCAAAT
CCCATGGTGGTTGCTAATGCTGTGGCAGCCTTGTCAGAAATCAGTGAGTCTCACCCAAATAGCAACCTGCTTGACCTGAA
CCCTCAGAATATTAATAAGCTGTTAACAGCCCTAAACAAATGCGCCGAATGGGGTCAGATCTTCATCTTGGACTGCCTGT
CCAATTACAACCCCAAGGATGATCGGGAGGCTCAGAGTATCTGTGAGCAGGTGACTCCCAGGCTCTCACATGCCAGCTCA
GCAGTGGTCCTATCAGCTGTGAAAGTCCTGATGAAGTTCTTAGAGCTGCTGCCCAAGGACTCTGACTACTACAACATGCT
ACTAAGAAGCTGGCTCCTCCCCTGGTAACTCTGCTCCCTGGGGAACCTGAAGTGCAGTACGTCACCCTGAGGAACATCAA
CCTCATTGTACAGAAAAGGCCTGAAATCTTAAAGCAAGAGATCAAAGTCTTCTTTGTGAAGTACAATGACCCCATCTATA
TCAAGTTGGAAAAGCTTGACATCATGATCCATTTGGCATCCCAAGCCAACATTGCCCAGGTCCTGGCAGAACTAAAGGAA
TATGCCACTGAACTGGACGTTGATTTTGTCCATAAAGCTGTGCAAGCTATTGGCCAATGTGCCATCAAGGTTGAGCAATC
TGCCGAGCACTGCGTGAGCACATTGCTGGACCTTATCCAGACCAAAGTCAACTACGTGGTTCAGGAGGCGATTGCTGTCA
TCAAGGACATCCTCCGCAAATATCCCAACAAGTATGAAAGTATCATTGCTACTCTGTATGAGAACCTTGATTCCCTTGAT
GAGCCAGATGCTCAAGCTGCCATGATCTGGATGGTAGGAGAATATGCTGAGAGAATCGATAATGCAGATGAGCTTCTGGA
AAGTTTCCTGGAGGGCTTCCATGATGAGAGCACCCAGGTGCAGCTAACCCTGCTTACAGCAATAGTGAATCTGTTTCTCA
AGAAACCTTCAGAAACTCAGGAACTGGTCCAGCAGGTCTTGAGTTTGGCAACTCAGGATTCTGATATCCTGATCTTCAAG
ACCAGGGTTATATCTACTGGTGCCTTCTTCCACAGATCCTGTGACAGCCAAGGATGTAGTCTTATCCAAACAGCCTTTGA
TCTCT
ORF - retro_meug_1205 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: |
85.9 % |
Parental protein coverage: |
57.33 % |
Number of stop codons detected: |
0 |
Number of frameshifts detected |
3 |
Retrocopy - Parental Gene Alignment:
Parental | EIFELKAELNSDKKEKKKEAVKKVIASMTVGKDVSALFPDVVNCMQTDNLELKKLVYLYLMNYAKSQPDM |
| EIFELKAEL...KKEK.KEA.KKVIA.MTVGKD.S.LFPDVVNC.Q.DNLELKKLVYLYLMNYAKSQPDM |
Retrocopy | EIFELKAELSNEKKEKRKEAIKKVIAVMTVGKDASSLFPDVVNCVQMDNLELKKLVYLYLMNYAKSQPDM |
|
Parental | AIMAVNTFVKDCEDPNPLIRALAVRTMGCIRVDKITEYLCEPLRKCLKDEDPYVRKTAAVCVAKLHDINA |
| AIM.VN.FVKDCEDPNPLI.ALA.RTMGCI.VDKIT.YLCEPL.KCL.DEDPYV.KTAAVCVAKLH.INA |
Retrocopy | AIMTVNNFVKDCEDPNPLICALAFRTMGCIWVDKITKYLCEPLLKCLNDEDPYVQKTAAVCVAKLHNINA |
|
Parental | QLVEDQGFLDTLKDLISDSNPMVVANAVAALSEIAESHPSSNLLDLNPQSINKLLTALNECTEWGQIFIL |
| Q.VEDQG.LD...DLI.DSNPMVVANAVAALSEI.ESHP.SNLLDLNPQ.INKLLTALN.C.EWGQIFIL |
Retrocopy | QMVEDQGSLDSPRDLIADSNPMVVANAVAALSEISESHPNSNLLDLNPQNINKLLTALNKCAEWGQIFIL |
|
Parental | DCLANYMPKDDREAQSICERVTPRLSHANSAVVLSAVKVLMKFMEMLSKDLDYYGTLL-KKLAPPLVTLL |
| DCL.NY.PKDDREAQSICE.VTPRLSHA.SAVVLSAVKVLMKF.E.L.KD.DYY..LL.KKLAPPLVTLL |
Retrocopy | DCLSNYNPKDDREAQSICEQVTPRLSHASSAVVLSAVKVLMKFLELLPKDSDYYNMLL<KKLAPPLVTLL |
|
Parental | SAEPELQYVALRNINLIVQKRPEILKHEMKVFFVKYNDPIYVKLEKLDIMIRLASQANIAQVLAELKEYA |
| ..EPE.QYV.LRNINLIVQKRPEILK.E.KVFFVKYNDPIY.KLEKLDIMI.LASQANIAQVLAELKEYA |
Retrocopy | PGEPEVQYVTLRNINLIVQKRPEILKQEIKVFFVKYNDPIYIKLEKLDIMIHLASQANIAQVLAELKEYA |
|
Parental | TEVDVDFVRKAVRAIGRCAIKVEQSAERCVSTLLDLIQTKVNYVVQEAIVVIKDIFRKYPNKYESVIATL |
| TE.DVDFV.KAV.AIG.CAIKVEQSAE.CVSTLLDLIQTKVNYVVQEAI.VIKDI.RKYPNKYES.IATL |
Retrocopy | TELDVDFVHKAVQAIGQCAIKVEQSAEHCVSTLLDLIQTKVNYVVQEAIAVIKDILRKYPNKYESIIATL |
|
Parental | CENLDSLDEPEARAAMIWIVGEYAERIDNADELLESFLEGFHDESTQVQLQLLTAIVKLFLKKPTETQEL |
| .ENLDSLDEP.A.AAMIW.VGEYAERIDNADELLESFLEGFHDESTQVQL.LLTAIV.LFLKKP.ETQEL |
Retrocopy | YENLDSLDEPDAQAAMIWMVGEYAERIDNADELLESFLEGFHDESTQVQLTLLTAIVNLFLKKPSETQEL |
|
Parental | VQQVLSLATQDSD-NPDLRDRGYIYWRLL-STDPVAAKEVVLAEKPLIS |
| VQQVLSLATQDSD..PDL.D.GYIYW.LL.STDPV.AK.VVL...PLIS |
Retrocopy | VQQVLSLATQDSD<YPDLQDQGYIYWCLL<STDPVTAKDVVLSKQPLIS |
|
Legend:
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Macropus eugenii was not studied using RNA-Seq expression data.
Macropus eugenii was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_meug_1205 retrocopy.
Macropus eugenii was not studied using FANTOM5 data.
retro_meug_1205 was not experimentally validated.
Retrocopy orthology:
Macropus eugenii does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to
help section.
Parental genes homology:
Parental genes homology involve
3 parental genes, and
3 retrocopies.