RetrogeneDB ID:

retro_meug_1379

Retrocopy
location
Organism:Wallaby (Macropus eugenii)
Coordinates:Scaffold38523:1597..1879(-)
Located in intron of:None
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:RBP1
Ensembl ID:ENSMEUG00000003195
Aliases:None
Description:retinol binding protein 1, cellular [Source:HGNC Symbol;Acc:9919]


Retrocopy-Parental alignment summary:






>retro_meug_1379
GAAATCATCCAGAATGGTGACCATATGATCATCCACACTCTGAGTACTTTCAGGAACTACATCATGGAATTTGACATAGG
GTGGGAATTTGAGGAGGATCTGTCCAGCATGGAAGACCACAAATGCCTGATCAAGATGAGCTGGGACAGTGACAATCTGC
AGTGTGTACAGAAAGGGGAGAAGGAACACTGAAGTTGGACACAGTAGATTGAAGGCAATGAGCTGCATCTGGAAATGAGG
GTGCAAGGTGTCATATGCAAGCAAGTCTTCAAGAAGGTGCAG

ORF - retro_meug_1379 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 81.91 %
Parental protein coverage: 69.63 %
Number of stop codons detected: 2
Number of frameshifts detected 0


Retrocopy - Parental Gene Alignment:

ParentalEIVQNGDHMIIRTLSTFRNYIMEFDIGQEFEEDLSGVDDRKCLTKVSWDGDKLQCVQKGEKEGRGWTHWI
EI.QNGDHMII.TLSTFRNYIMEFDIG.EFEEDLS...D.KCL.K.SWD.D.LQCVQKGEKE...WT..I
RetrocopyEIIQNGDHMIIHTLSTFRNYIMEFDIGWEFEEDLSSMEDHKCLIKMSWDSDNLQCVQKGEKEH*SWTQ*I
ParentalEGNELHLEMRVQGVVCKQVFKKVQ
EGNELHLEMRVQGV.CKQVFKKVQ
RetrocopyEGNELHLEMRVQGVICKQVFKKVQ

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






Macropus eugenii was not studied using RNA-Seq expression data.
Macropus eugenii was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_meug_1379 retrocopy.
Macropus eugenii was not studied using FANTOM5 data.
retro_meug_1379 was not experimentally validated.

Retrocopy orthology:
Macropus eugenii does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

Parental genes homology:
Parental genes homology involve 6 parental genes, and 12 retrocopies.

Species Parental gene accession Retrocopies number
Bos taurus ENSBTAG000000200281 retrocopy
Erinaceus europaeus ENSEEUG000000053671 retrocopy
Macropus eugenii ENSMEUG000000021361 retrocopy
Macropus eugenii ENSMEUG00000003195 2 retrocopies
retro_meug_1379 , retro_meug_511,
Macropus eugenii ENSMEUG000000125016 retrocopies
Ictidomys tridecemlineatus ENSSTOG000000056731 retrocopy



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