RetrogeneDB ID: retro_meug_1456

Retrocopy location

• Organism: Wallaby (Macropus eugenii)
• Coordinates: Scaffold41119:23347..23707(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: ENSMEUG00000001034
• Aliases: None
• Status: KNOWN_PSEUDOGENE

Parental gene information

• Parental gene symbol: STMN4
• Ensembl ID: ENSMEUG00000006013
• Aliases: None
• Description: stathmin-like 4 [Source:HGNC Symbol;Acc:16078]

Sequence

>retro_meug_1456
CAGGCATTTGAGCTGATACTTAGTCCTCATTCCAAAGAAGCAGTCCCAGAATTTCCCCTTTCCCCTCCAAAGAAGAATGA
TCTTTCCCTGGAAGAAATTCAGAAGAAGCTAGAAGCTGCAGAAGAAAGACGCAAGTCTCATGAAGCTGCAATCTTGAAGC
AGCTAGCTGAGCAGCGGCAGCATGAGAAGGAGGTGCTTCAGAAAGCAATTGACGAAAACAGCAACGTTAGTAAAATGGGG
GAAGAAAAACTGACCCACAGAATGGAAGCTAACAAAGAGAACCAAGAGGCCCAAATGGCTGCTAAGCTGGAGCGTCTGCG
GGAGAAGGATAAGCACATGGAGGAGGTACGGAAGAACAGA

Alignment

ORF - retro_meug_1456 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 67.5 %
• Parental protein coverage: 78.95 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  QSFEVILKPPSFDGVPEFNASLPRRRDPSLEEIQKKLEAAEERRKYQEAELLKHLAEKREHEREVIQKAI
          Q.FE.IL.P.S...VPEF..S.P...D.SLEEIQKKLEAAEERRK..EA..LK.LAE.R.HE.EV.QKAI
Retrocopy QAFELILSPHSKEAVPEFPLSPPKKNDLSLEEIQKKLEAAEERRKSHEAAILKQLAEQRQHEKEVLQKAI

Parental  EENNNFIKMAKEKLTQKMESNKENREAHLAAMLERLQEKDKHAEEVRKNK
          .EN.N..KM..EKLT..ME.NKEN.EA..AA.LERL.EKDKH.EEVRKN.
Retrocopy DENSNVSKMGEEKLTHRMEANKENQEAQMAAKLERLREKDKHMEEVRKNR

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Macropus eugenii was not studied using RNA-Seq expression data.

ChIP-Seq

Macropus eugenii was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_meug_1456 retrocopy.

TSS

Macropus eugenii was not studied using FANTOM5 data.

Lab

retro_meug_1456 was not experimentally validated.

Homology

Retrocopy orthology:

Macropus eugenii does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 3 parental genes, and 3 retrocopies.

Species	Parental gene accession	Retrocopies number
Dasypus novemcinctus	ENSDNOG00000003756	1 retrocopy	retro_dnov_935,
Macropus eugenii	ENSMEUG00000006013	1 retrocopy	retro_meug_1456 ,
Tupaia belangeri	ENSTBEG00000007290	1 retrocopy	retro_tbel_2706,