RetrogeneDB ID: | retro_dnov_935 | ||
Retrocopylocation | Organism: | Armadillo (Dasypus novemcinctus) | |
Coordinates: | scaffold_123449:1089..1505(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | STMN4 | ||
Ensembl ID: | ENSDNOG00000003756 | ||
Aliases: | None | ||
Description: | stathmin-like 4 [Source:HGNC Symbol;Acc:16078] |
Percent Identity: | 57.86 % |
Parental protein coverage: | 63.85 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 1 |
Parental | DMEVIELNKCTSGQSFEVILKPPSFDGVPEFNASLPRRR-DPSLEEIQKKLEAAEERRKYQEAELLKHLA |
D..V.E..KCTSGQ.FE..L.P.S.D.VPEF...L.RRR.D.SL.EIQ.KLEA.EER.K..EA..LK.L. | |
Retrocopy | DIQVKEMEKCTSGQVFEMTLSPLSKDYVPEFPLPLQRRR<DLSLKEIQMKLEAVEERCKFHEAKVLKQLI |
Parental | EKREHEREVIQKAIEENNNFIKMANEKLAQKMES--KEREAHLAAMLERLQ-KDKHAEEVRKNKELKEEA |
EK.E.E.EV.QK..EENNNF.KMA...L..KME.....REA..AA..E.LQ.KDKH.E.V.K.KE....A | |
Retrocopy | EK*EDEKEVPQKITEENNNFSKMAEK*LIHKMEANKENREAQMAAKVEHLQEKDKHIEQVWKKKESNDPA |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP012922_ascending_colon | 0 .19 RPM | 0 .97 RPM |
SRP012922_cerebellum | 0 .27 RPM | 86 .88 RPM |
SRP012922_heart | 0 .00 RPM | 0 .23 RPM |
SRP012922_kidney | 0 .00 RPM | 0 .00 RPM |
SRP012922_liver | 0 .00 RPM | 0 .46 RPM |
SRP012922_lung | 0 .00 RPM | 0 .61 RPM |
SRP012922_quadricep_muscle | 0 .00 RPM | 0 .00 RPM |
SRP012922_spleen | 0 .00 RPM | 0 .00 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Dasypus novemcinctus | ENSDNOG00000003373 | 3 retrocopies | |
Dasypus novemcinctus | ENSDNOG00000003756 | 1 retrocopy |
retro_dnov_935 ,
|
Macropus eugenii | ENSMEUG00000006013 | 1 retrocopy | |
Tupaia belangeri | ENSTBEG00000007290 | 1 retrocopy |