RetrogeneDB ID: | retro_meug_154 | ||
Retrocopylocation | Organism: | Wallaby (Macropus eugenii) | |
Coordinates: | GeneScaffold_450:62654..63036(-) | ||
Located in intron of: | ENSMEUG00000003141 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | AP1S1 | ||
Ensembl ID: | ENSMEUG00000016245 | ||
Aliases: | None | ||
Description: | adaptor-related protein complex 1, sigma 1 subunit [Source:HGNC Symbol;Acc:559] |
Percent Identity: | 82.81 % |
Parental protein coverage: | 80.89 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 1 |
Parental | VRELMQVVLARKPKMCSFLEWRDLKVVYKRYASLYFCCAIEGQDNELITLELIHRYVELLDKYFGSV-CE |
VR.....VLARKPKMCSFL..RD.K.V.KRYA.LYFCCAIEGQ.N.LIT.ELIH.YV.LLDKYFGSV.CE | |
Retrocopy | VRREKKMVLARKPKMCSFLK*RDFKAVNKRYACLYFCCAIEGQNNKLITVELIH*YVKLLDKYFGSV>CE |
Parental | LDIIFNFEKAYFILDEFLMGGDVQDTSKKSVLKAIEQADLLQEEDESPRSVLEEMGLA |
LDIIFNFEKAYFILDEFLMG.DVQDT.KKS.LKAIEQADLLQEEDESP.S.LEEMGLA | |
Retrocopy | LDIIFNFEKAYFILDEFLMGDDVQDTFKKSMLKAIEQADLLQEEDESPQSALEEMGLA |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000002673 | 1 retrocopy | |
Felis catus | ENSFCAG00000029169 | 1 retrocopy | |
Homo sapiens | ENSG00000106367 | 1 retrocopy | |
Macropus eugenii | ENSMEUG00000001062 | 2 retrocopies | |
Macropus eugenii | ENSMEUG00000016245 | 3 retrocopies |
retro_meug_1011, retro_meug_154 , retro_meug_2051,
|
Macropus eugenii | ENSMEUG00000016580 | 11 retrocopies | |
Microcebus murinus | ENSMICG00000005406 | 2 retrocopies | |
Myotis lucifugus | ENSMLUG00000009898 | 2 retrocopies | |
Mustela putorius furo | ENSMPUG00000015867 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000019520 | 3 retrocopies |