RetrogeneDB ID: | retro_meug_1718 | ||
Retrocopylocation | Organism: | Wallaby (Macropus eugenii) | |
Coordinates: | Scaffold5476:25890..26251(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | SNRPC | ||
Ensembl ID: | ENSMEUG00000009300 | ||
Aliases: | None | ||
Description: | small nuclear ribonucleoprotein polypeptide C [Source:HGNC Symbol;Acc:11157] |
Percent Identity: | 51.88 % |
Parental protein coverage: | 89.44 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 2 |
Parental | PSVRK-THCSGRKHKENVKDYYQKWMEEQAQSLIDKTTAAFQQGKIPPTPFSAPPPGGAMIPPP-PSLPG |
PSV...T.CS..KHKEN...YYQKW.E.QAQSL..KTT.AFQQ..IPP..FSAPP.GG.M.PP...S..G | |
Retrocopy | PSVSR<TYCSWGKHKENGRNYYQKWIEKQAQSLTEKTTTAFQQARIPPNLFSAPPLGGSMTPPSHTSTMG |
Parental | PP-RPGMMPAPHMGGPPMMPMMGPPPPGMMPVGPAPGMRPPMGGHMP---MMPGPPMMRPPAR |
.P..PG.MP.....GPP..P.MG.P..G..P..P.P....P...H.P...M.P..P.M..P.R | |
Retrocopy | TP<VPGTMPL----GPP--PGMGIPMRGLRPMTPGP----PVMRHLPPPTMVPTHPAMPRPGR |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Canis familiaris | ENSCAFG00000001231 | 3 retrocopies | |
Macropus eugenii | ENSMEUG00000009300 | 1 retrocopy |
retro_meug_1718 ,
|
Monodelphis domestica | ENSMODG00000013904 | 1 retrocopy | |
Oryctolagus cuniculus | ENSOCUG00000026668 | 3 retrocopies | |
Otolemur garnettii | ENSOGAG00000008755 | 9 retrocopies | |
Pongo abelii | ENSPPYG00000029902 | 3 retrocopies | |
Sarcophilus harrisii | ENSSHAG00000000945 | 1 retrocopy |