Parental gene:

ENSCAFG00000001231

Aliases:None
Description:None
Organism:Dog (Canis familiaris)
Coordinates:12:3996585..4007706(+)


>ENSCAFG00000001231
GGAGTGGCCAACGGCCTGCAGAGCAACATGCCTAAGTTTTATTGTGACTACTGCGACACATACCTCACCCATGACTCTCC
ATCTGTGAGAAAGACACACTGCAGTGGTAGGAAACACAAAGAGAATGTGAAAGACTACTATCAGAAATGGATGGAAGAGC
AGGCTCAGAGCCTGATCGACAAAACAACCGCTGCATTTCAACAAGGAAAGATACCTCCTACTCCATTCTCTGCTCCTCCT
CCTGCAGGGGCAATGATCCCACCTCCCCCCAGTCTCCCGGGTCCTCCTCGCCCTGGTATGATGCCAGCCCCCCATATGGG
GGGCCCTCCCATGATGCCAATGATGGGCCCTCCTCCTCCTGGGATGATGCCAGTGGGACCT

Library Parental gene expression (RPM)
SRP012049_cerebellum 6 .47 RPM
SRP017611_brain 2 .70 RPM
SRP017611_kidney 5 .22 RPM
SRP017611_liver 2 .54 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000000963 possible_ortholog 7 retrogenes
retro_amel_1237, retro_amel_1249, retro_amel_149, retro_amel_1522, retro_amel_1523, retro_amel_592, retro_amel_988,
Bos taurus ENSBTAG00000024549 possible_ortholog 1 retrogene
retro_btau_1636,
Callithrix jacchus ENSCJAG00000015321 possible_ortholog 16 retrogenes
retro_cjac_1009, retro_cjac_1015, retro_cjac_1064, retro_cjac_1750, retro_cjac_1937, retro_cjac_2014, retro_cjac_2395, retro_cjac_2456, retro_cjac_2785, retro_cjac_3056, retro_cjac_3110, retro_cjac_400, retro_cjac_4010, retro_cjac_617, retro_cjac_770, retro_cjac_873,
Cavia porcellus ENSCPOG00000008563 possible_ortholog 3 retrogenes
retro_cpor_1529, retro_cpor_1540, retro_cpor_288,
Felis catus ENSFCAG00000005876 possible_ortholog 12 retrogenes
retro_fcat_1008, retro_fcat_1088, retro_fcat_1265, retro_fcat_1545, retro_fcat_1599, retro_fcat_161, retro_fcat_1664, retro_fcat_1814, retro_fcat_446, retro_fcat_578, retro_fcat_627, retro_fcat_922,
Homo sapiens ENSG00000124562 possible_ortholog 6 retrogenes
retro_hsap_1531, retro_hsap_1866, retro_hsap_2865, retro_hsap_3195, retro_hsap_3829, retro_hsap_4241,
Gorilla gorilla ENSGGOG00000012499 possible_ortholog 7 retrogenes
retro_ggor_1169, retro_ggor_1333, retro_ggor_1364, retro_ggor_1981, retro_ggor_2577, retro_ggor_2699, retro_ggor_2842,
Loxodonta africana ENSLAFG00000013534 possible_ortholog 2 retrogenes
retro_lafr_621, retro_lafr_878,
Macropus eugenii ENSMEUG00000009300 possible_ortholog 1 retrogene
retro_meug_1718,
Myotis lucifugus ENSMLUG00000002488 possible_ortholog 8 retrogenes
retro_mluc_1246, retro_mluc_1627, retro_mluc_2020, retro_mluc_2099, retro_mluc_2144, retro_mluc_2332, retro_mluc_735, retro_mluc_962,
Macaca mulatta ENSMMUG00000000869 possible_ortholog 9 retrogenes
retro_mmul_1148, retro_mmul_1161, retro_mmul_1343, retro_mmul_1465, retro_mmul_1573, retro_mmul_1626, retro_mmul_2016, retro_mmul_2314, retro_mmul_678,
Monodelphis domestica ENSMODG00000013904 ortholog_one2many 1 retrogene
retro_mdom_22,
Mustela putorius furo ENSMPUG00000003210 possible_ortholog 7 retrogenes
retro_mputfur_1233, retro_mputfur_1260, retro_mputfur_1396, retro_mputfur_374, retro_mputfur_441, retro_mputfur_519, retro_mputfur_531,
Mus musculus ENSMUSG00000024217 possible_ortholog 21 retrogenes
retro_mmus_1079, retro_mmus_1084, retro_mmus_1231, retro_mmus_1313, retro_mmus_1374, retro_mmus_1400, retro_mmus_1515, retro_mmus_1649, retro_mmus_1673, retro_mmus_1781, retro_mmus_1876, retro_mmus_2087, retro_mmus_2211, retro_mmus_2506, retro_mmus_2973, retro_mmus_3089, retro_mmus_3366, retro_mmus_431, retro_mmus_531, retro_mmus_566, retro_mmus_638,
Nomascus leucogenys ENSNLEG00000008392 possible_ortholog 2 retrogenes
retro_nleu_2129, retro_nleu_99,
Oryctolagus cuniculus ENSOCUG00000026668 possible_ortholog 3 retrogenes
retro_ocun_1019, retro_ocun_184, retro_ocun_196,
Otolemur garnettii ENSOGAG00000008755 possible_ortholog 9 retrogenes
retro_ogar_1040, retro_ogar_130, retro_ogar_1763, retro_ogar_183, retro_ogar_2434, retro_ogar_3064, retro_ogar_3322, retro_ogar_3377, retro_ogar_697,
Procavia capensis ENSPCAG00000016885 possible_ortholog 1 retrogene
retro_pcap_34,
Pongo abelii ENSPPYG00000017272 possible_ortholog 4 retrogenes
retro_pabe_1271, retro_pabe_3066, retro_pabe_3225, retro_pabe_915,
Pongo abelii ENSPPYG00000029902 ortholog_one2one 3 retrogenes
retro_pabe_2367, retro_pabe_3397, retro_pabe_3524,
Pan troglodytes ENSPTRG00000018070 possible_ortholog 6 retrogenes
retro_ptro_1037, retro_ptro_1283, retro_ptro_1937, retro_ptro_2249, retro_ptro_2606, retro_ptro_2883,
Pteropus vampyrus ENSPVAG00000015597 possible_ortholog 1 retrogene
retro_pvam_1213,
Rattus norvegicus ENSRNOG00000000493 possible_ortholog 30 retrogenes
retro_rnor_1027, retro_rnor_1079, retro_rnor_1100, retro_rnor_1196, retro_rnor_1219, retro_rnor_1421, retro_rnor_1628, retro_rnor_1637, retro_rnor_1701, retro_rnor_1761, retro_rnor_2259, retro_rnor_2261, retro_rnor_2385, retro_rnor_2480, retro_rnor_2663, retro_rnor_2875, retro_rnor_2893, retro_rnor_445, retro_rnor_483, retro_rnor_495, retro_rnor_502, retro_rnor_630, retro_rnor_705, retro_rnor_706, retro_rnor_707, retro_rnor_730, retro_rnor_747, retro_rnor_778, retro_rnor_802, retro_rnor_889,
Sarcophilus harrisii ENSSHAG00000000945 possible_ortholog 1 retrogene
retro_shar_112,
Sus scrofa ENSSSCG00000001531 possible_ortholog 1 retrogene
retro_sscr_709,
Ictidomys tridecemlineatus ENSSTOG00000013786 possible_ortholog 3 retrogenes
retro_itri_1278, retro_itri_1374, retro_itri_861,
Tarsius syrichta ENSTSYG00000011216 possible_ortholog 6 retrogenes
retro_tsyr_1198, retro_tsyr_1475, retro_tsyr_1746, retro_tsyr_185, retro_tsyr_260, retro_tsyr_690,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cfam_348 78.12 75.59
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2. retro_cfam_402 89.52 97.64
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3. retro_cfam_409 70.16 96.85
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Download FASTA sequences of all ENSCAFG00000001231 retrocopies