RetrogeneDB ID: retro_meug_1793

Retrocopy location

• Organism: Wallaby (Macropus eugenii)
• Coordinates: Scaffold59428:8453..8810(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: GOLGA7B
• Ensembl ID: ENSMEUG00000001446
• Aliases: None
• Description: golgin A7 family, member B [Source:HGNC Symbol;Acc:31668]

Sequence

>retro_meug_1793
CAGCAGGCCCCCATGTCTGGCAAGGTCTTCATCTAGCACGACTACAGCAGTGACACCTGGTTCCAGTTCCAGACTAAGTT
CCCCAAGGAGTTGGAGAACCTGATTCACTGGCAGTAGTTTGAGGAAACTGTTCCCACTCTAAATAACCTTTATGCAGAAG
CAGAAAAGCTTGGGGGCCAATCTTTCCTGAAAGGCTGTTTAGCTTGTTTGACAGCATATATTATCTTTTTGTGCATGGAA
GCACATTATGAGAAGGTTCTGAAGAAAATCACCAAATATATGTAGGAACAGAGTGAGAAGATTTATGCTCCATGGGGCCC
CCTTCTGACAGACCCAAATGAGAGAGGACTTCATGTT

Alignment

ORF - retro_meug_1793 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 66.39 %
• Parental protein coverage: 93.7 %
• Number of stop codons detected: 3
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  RSASLATKVFVQRDYSDGTTCQFQTKFPPELDSRIERQLFEETVKTLNNFYAEAEKIGGSSYLEGCLACA
          ..A....KVF...DYS..T..QFQTKFP.EL...I..Q.FEETV.TLNN.YAEAEK.GG.S.L.GCLAC.
Retrocopy QQAPMSGKVFI*HDYSSDTWFQFQTKFPKELENLIHWQ*FEETVPTLNNLYAEAEKLGGQSFLKGCLACL

Parental  TAYFIFLCMETHYEKVLKKISRYIQEQNEKIFAPRGLLLTDPVERGMRV
          TAY.IFLCME.HYEKVLKKI..Y..EQ.EKI.AP.G.LLTDP.ERG..V
Retrocopy TAYIIFLCMEAHYEKVLKKITKYM*EQSEKIYAPWGPLLTDPNERGLHV

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Macropus eugenii was not studied using RNA-Seq expression data.

ChIP-Seq

Macropus eugenii was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_meug_1793 retrocopy.

TSS

Macropus eugenii was not studied using FANTOM5 data.

Lab

retro_meug_1793 was not experimentally validated.

Homology

Retrocopy orthology:

Macropus eugenii does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 3 parental genes, and 4 retrocopies.

Species	Parental gene accession	Retrocopies number
Dipodomys ordii	ENSDORG00000015475	1 retrocopy	retro_dord_497,
Macropus eugenii	ENSMEUG00000001446	2 retrocopies	retro_meug_1793 , retro_meug_276,
Microcebus murinus	ENSMICG00000000199	1 retrocopy	retro_mmur_357,