RetrogeneDB ID: | retro_meug_276 | ||
Retrocopy location | Organism: | Wallaby (Macropus eugenii) | |
| Coordinates: | GeneScaffold_9122:21618..21910(-) | ||
| Located in intron of: | ENSMEUG00000001848 | ||
Retrocopy information | Ensembl ID: | None | |
| Aliases: | None | ||
| Status: | NOVEL | ||
Parental gene information | Parental gene summary: | ||
| Parental gene symbol: | GOLGA7B | ||
| Ensembl ID: | ENSMEUG00000001446 | ||
| Aliases: | None | ||
| Description: | golgin A7 family, member B [Source:HGNC Symbol;Acc:31668] |
Retrocopy-Parental alignment summary:
>retro_meug_276
GTGTCCAACAAAGCTTCCATCCAATGGGATTACAGCAACAGCATCTGAGGTCAGTTCCAGACCAAGTTCCCTGCCACGTT
AAATAATCAGATTGAGCAAGAGTAGTTTGAAGAAACAGTTCATACTCTATATAACCTTTATGCAAAAGCAGAAAAGCTTT
GGGGCCAATCCTACCTTGAAAGCTGTTTAGCTTTTGGTGACATATCCTATCTCTTTCTGCATAGAAACACATTAAGAAAA
GGTTCTCAAGAAAATCACCAGATATATTCAGAAACAGAACAAGATATATGCT
ORF - retro_meug_276 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
| Percent Identity: | 51.0 % |
| Parental protein coverage: | 77.95 % |
| Number of stop codons detected: | 4 |
| Number of frameshifts detected: | 1 |
Retrocopy - Parental Gene Alignment:
| Parental | LATKVFVQRDYSDGTTCQFQTKFPPELDSRIERQLFEETVKTLNNFYAEA-EKIGGSSYLEGCLACATAY |
| ...K...Q.DYS.....QFQTKFP..L...IE...FEETV.TL.N.YA.A....G....L.......T.Y | |
| Retrocopy | VSNKASIQWDYSNSI*GQFQTKFPATLNNQIEQE*FEETVHTLYNLYAKA>KSFGANPTLKAV*LLVT-Y |
| Parental | FIFLCMETHYEKVLKKISRYIQEQNEKIFA |
| .I..C.ETH.EKVLKKI.RYIQ.QN.KI.A | |
| Retrocopy | PISFCIETH*EKVLKKITRYIQKQN-KIYA |
Legend:
| * | Stop codon |
| > | Forward frameshift by one nucleotide |
| < | Reverse frameshift by one nucleotide |
Macropus eugenii was not studied using RNA-Seq expression data.
Macropus eugenii was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_meug_276 retrocopy.
Macropus eugenii was not studied using FANTOM5 data.
retro_meug_276 was not experimentally validated.
Retrocopy orthology:
Macropus eugenii does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.Parental genes homology:
Parental genes homology involve 3 parental genes, and 4 retrocopies.| Species | Parental gene accession | Retrocopies number | |
|---|---|---|---|
| Dipodomys ordii | ENSDORG00000015475 | 1 retrocopy | |
| Macropus eugenii | ENSMEUG00000001446 | 2 retrocopies |
retro_meug_1793, retro_meug_276 ,
|
| Microcebus murinus | ENSMICG00000000199 | 1 retrocopy |