RetrogeneDB ID: retro_meug_276

Retrocopy location

• Organism: Wallaby (Macropus eugenii)
• Coordinates: GeneScaffold_9122:21618..21910(-)
• Located in intron of: ENSMEUG00000001848

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: GOLGA7B
• Ensembl ID: ENSMEUG00000001446
• Aliases: None
• Description: golgin A7 family, member B [Source:HGNC Symbol;Acc:31668]

Sequence

>retro_meug_276
GTGTCCAACAAAGCTTCCATCCAATGGGATTACAGCAACAGCATCTGAGGTCAGTTCCAGACCAAGTTCCCTGCCACGTT
AAATAATCAGATTGAGCAAGAGTAGTTTGAAGAAACAGTTCATACTCTATATAACCTTTATGCAAAAGCAGAAAAGCTTT
GGGGCCAATCCTACCTTGAAAGCTGTTTAGCTTTTGGTGACATATCCTATCTCTTTCTGCATAGAAACACATTAAGAAAA
GGTTCTCAAGAAAATCACCAGATATATTCAGAAACAGAACAAGATATATGCT

Alignment

ORF - retro_meug_276 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 51. %
• Parental protein coverage: 77.95 %
• Number of stop codons detected: 4
• Number of frameshifts detected: 1

Retrocopy - Parental Gene Alignment:

Parental  LATKVFVQRDYSDGTTCQFQTKFPPELDSRIERQLFEETVKTLNNFYAEA-EKIGGSSYLEGCLACATAY
          ...K...Q.DYS.....QFQTKFP..L...IE...FEETV.TL.N.YA.A....G....L.......T.Y
Retrocopy VSNKASIQWDYSNSI*GQFQTKFPATLNNQIEQE*FEETVHTLYNLYAKA>KSFGANPTLKAV*LLVT-Y

Parental  FIFLCMETHYEKVLKKISRYIQEQNEKIFA
          .I..C.ETH.EKVLKKI.RYIQ.QN.KI.A
Retrocopy PISFCIETH*EKVLKKITRYIQKQN-KIYA

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Macropus eugenii was not studied using RNA-Seq expression data.

ChIP-Seq

Macropus eugenii was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_meug_276 retrocopy.

TSS

Macropus eugenii was not studied using FANTOM5 data.

Lab

retro_meug_276 was not experimentally validated.

Homology

Retrocopy orthology:

Macropus eugenii does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 3 parental genes, and 4 retrocopies.

Species	Parental gene accession	Retrocopies number
Dipodomys ordii	ENSDORG00000015475	1 retrocopy	retro_dord_497,
Macropus eugenii	ENSMEUG00000001446	2 retrocopies	retro_meug_1793, retro_meug_276 ,
Microcebus murinus	ENSMICG00000000199	1 retrocopy	retro_mmur_357,