RetrogeneDB ID: retro_meug_1797

Retrocopy location

• Organism: Wallaby (Macropus eugenii)
• Coordinates: Scaffold59566:8254..8605(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: None
• Ensembl ID: ENSMEUG00000004247
• Aliases: None
• Description: None

Sequence

>retro_meug_1797
ATGGTGACTTATAGCTTGGTGAACAAGTGGCTGTGGGCCTTGGAGGATATCGAATAGGAGATAGGGTCTGTTCTGCAGAG
ACCTAGAACTCTGATTCAGGAGCTGTCCAACGAGAAGGCAAACAAACAGCTGCTGAATGGGCAGGTGGCAGCCTTCACCT
CCCTGGTGCAGCCCATGGAGGCCAAACTGTCAGCCCAGATCTGATACCTGACCCAGGTAGCAACTGGCCAGCCTCATGAG
GGTTCCAGCTAGTCTTTAGGAAAGGACTGCCAGATGGCACTGAAATGAGTAGATTATGCTCGATTGAAACTGAGTGAGCT
GGCATGGACCTGTGAACAGGTGTTGGAGACC

Alignment

ORF - retro_meug_1797 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 74.36 %
• Parental protein coverage: 100. %
• Number of stop codons detected: 4
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  MATYSLANERLRALEDIEREIGAILQSAGNVILELSKEKANERLLDRQAAAFTSSVQHVEAELSAQIRYL
          M.TYSL.N..L.ALEDIE.EIG..LQ.....I.ELS.EKAN..LL..Q.AAFTS.VQ..EA.LSAQI.YL
Retrocopy MVTYSLVNKWLWALEDIE*EIGSVLQRPRTLIQELSNEKANKQLLNGQVAAFTSLVQPMEAKLSAQI*YL

Parental  TQVATGQPHEGSSYSSRKDCQMALKRVDYARLKLSELARTCEQVLET
          TQVATGQPHEGSS.S..KDCQMALK.VDYARLKLSELA.TCEQVLET
Retrocopy TQVATGQPHEGSS*SLGKDCQMALK*VDYARLKLSELAWTCEQVLET

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Macropus eugenii was not studied using RNA-Seq expression data.

ChIP-Seq

Macropus eugenii was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_meug_1797 retrocopy.

TSS

Macropus eugenii was not studied using FANTOM5 data.

Lab

retro_meug_1797 was not experimentally validated.

Homology

Retrocopy orthology:

Macropus eugenii does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 4 parental genes, and 6 retrocopies.

Species	Parental gene accession	Retrocopies number
Macropus eugenii	ENSMEUG00000004247	2 retrocopies	retro_meug_1797 , retro_meug_2072,
Myotis lucifugus	ENSMLUG00000002540	2 retrocopies	retro_mluc_376, retro_mluc_38,
Monodelphis domestica	ENSMODG00000028979	1 retrocopy	retro_mdom_1461,
Tarsius syrichta	ENSTSYG00000014148	1 retrocopy	retro_tsyr_1797,