RetrogeneDB ID: retro_mluc_376

Retrocopy location

• Organism: Microbat (Myotis lucifugus)
• Coordinates: GL429880:2294673..2295027(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: ENSMLUG00000027632
• Aliases: None
• Status: KNOWN_PROTEIN_CODING

Parental gene information

• Parental gene symbol: None
• Ensembl ID: ENSMLUG00000002540
• Aliases: None
• Description: None

Sequence

>retro_mluc_376
ATGGCTACCTACAGCCTGGCAAACGAGCGACTACGTGCCTTGGAAGACATCGAACGGGAAATCTGTGCCATCCTTCAGAA
TGCAGGTACCGTAATCCTGGAACTTTCCAAGGAAAAAACTAATGCGCAGCTGCTATACCGACAAGCGGCGGCTTTCAAGG
CATCGGTGCAACAGGTAGAAGCGGAGCTGTCGGCTCAGATCCGCTACCTCACCCAGGTGGCCACAGGGCAGCCCCATGAG
GGCTCCAGCTACTCTTCAAGGAAGGACTGTCAGATGGCGCTACAGCGAGTGGACTATGCTCGCCTCAAGCTCAGAGATGT
GGCCCAAACCTGTGAGCAGATGCTGGAAAACTAA

Alignment

ORF - retro_mluc_376 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 92.31 %
• Parental protein coverage: 100. %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  MATYSLANERLRALEDIEREIGAILQNAGTVILELSKEKTNERLLDRQAAAFTASVQHVEAELSAQIRYL
          MATYSLANERLRALEDIEREI.AILQNAGTVILELSKEKTN..LL.RQAAAF.ASVQ.VEAELSAQIRYL
Retrocopy MATYSLANERLRALEDIEREICAILQNAGTVILELSKEKTNAQLLYRQAAAFKASVQQVEAELSAQIRYL

Parental  TQVATGQPHEGSSYSSRKDCQMALKRVDYARLKLSDVARTCEQMLEN
          TQVATGQPHEGSSYSSRKDCQMAL.RVDYARLKL.DVA.TCEQMLEN
Retrocopy TQVATGQPHEGSSYSSRKDCQMALQRVDYARLKLRDVAQTCEQMLEN

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Myotis lucifugus was not studied using RNA-Seq expression data.

ChIP-Seq

Myotis lucifugus was not studied using ChIP-Seq data.

EST

Myotis lucifugus was not studied using EST data.

TSS

Myotis lucifugus was not studied using FANTOM5 data.

Lab

retro_mluc_376 was not experimentally validated.

Homology

Retrocopy orthology:

Myotis lucifugus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 4 parental genes, and 6 retrocopies.

Species	Parental gene accession	Retrocopies number
Macropus eugenii	ENSMEUG00000004247	2 retrocopies	retro_meug_1797, retro_meug_2072,
Myotis lucifugus	ENSMLUG00000002540	2 retrocopies	retro_mluc_376 , retro_mluc_38,
Monodelphis domestica	ENSMODG00000028979	1 retrocopy	retro_mdom_1461,
Tarsius syrichta	ENSTSYG00000014148	1 retrocopy	retro_tsyr_1797,