RetrogeneDB ID: | retro_meug_1944 | ||
Retrocopylocation | Organism: | Wallaby (Macropus eugenii) | |
Coordinates: | Scaffold73718:7307..7811(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | TPM1 | ||
Ensembl ID: | ENSMEUG00000014581 | ||
Aliases: | None | ||
Description: | tropomyosin 1 (alpha) [Source:HGNC Symbol;Acc:12010] |
Percent Identity: | 58.93 % |
Parental protein coverage: | 51.53 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | LQKKLKGTEDELDKYSEALKDAQEKLELAEKKATDAEADVASLNRRIQLVEEELDRAQERLATALQKLEE |
...K........D...E.........E........AE..VASLN..IQLVE.ELDRAQERLATAL.KL.E | |
Retrocopy | VKHKTQVLQQQVDDAEERSERLRQEVEGQKQAREQAEVEVASLNCLIQLVENELDRAQERLATALKKLQE |
Parental | AEKAADESERGMKVIESRAQKDEEKMEIQEIQLKEAKHIAEDADRKYEEVARKLVIIESDLERAEERAEL |
AEKAADESERGMKVIE..A.KDEEKME.QEIQLKEAK..AE.ADRKY.EVARKLVI.E..LE..EERAEL | |
Retrocopy | AEKAADESERGMKVIENWALKDEEKMELQEIQLKEAKQTAEEADRKYKEVARKLVITEGNLECTEERAEL |
Parental | SEGKCAELEEELKTVTNNLKSLEAQAEK |
.E..C.E..E.......NLK...A..EK | |
Retrocopy | AESSCREMDEQIRQMDRNLKCPNAAEEK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Canis familiaris | ENSCAFG00000016966 | 1 retrocopy | |
Choloepus hoffmanni | ENSCHOG00000012788 | 11 retrocopies | |
Callithrix jacchus | ENSCJAG00000004355 | 2 retrocopies | |
Macropus eugenii | ENSMEUG00000014581 | 2 retrocopies |
retro_meug_1944 , retro_meug_2161,
|
Pongo abelii | ENSPPYG00000006534 | 1 retrocopy | |
Rattus norvegicus | ENSRNOG00000018184 | 1 retrocopy | |
Ictidomys tridecemlineatus | ENSSTOG00000009955 | 1 retrocopy | |
Tursiops truncatus | ENSTTRG00000003762 | 1 retrocopy | |
Vicugna pacos | ENSVPAG00000003277 | 1 retrocopy |