RetrogeneDB ID: | retro_meug_2029 | ||
Retrocopylocation | Organism: | Wallaby (Macropus eugenii) | |
Coordinates: | Scaffold8159:28984..29457(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | CREB1 | ||
Ensembl ID: | ENSMEUG00000007374 | ||
Aliases: | None | ||
Description: | cAMP responsive element binding protein 1 [Source:HGNC Symbol;Acc:2345] |
Percent Identity: | 56.25 % |
Parental protein coverage: | 51.49 % |
Number of stop codons detected: | 4 |
Number of frameshifts detected | 1 |
Parental | AITQGGAIQLANNGTDGVQGLQTLTMT-NAAATQASTTILQYAQTTDGQQILVPSNQVVVQAASGDVQTY |
A....G..QL....TDGVQGLQ.LTM..N...T...TT.LQYA...DG..IL.PSNQV.VQ..SGD..TY | |
Retrocopy | ATAPNGILQLVSQSTDGVQGLQALTMK<NTGNT*KGTTVLQYAWSSDGK*ILIPSNQVIVQTPSGDMRTY |
Parental | QIRTAPTSTIAPGVVMASSPALP---TQPAEEAARKREVRLMKNREAARECRRKKKEYVKCLENRVAVLE |
QI...P..T..P..V...SP......T........KRE.RLMKN.EAA.E..RKK....KCLEN.VAVLE | |
Retrocopy | QIHSIPGNTNIPQIVVMTSPSIRTS*TTNTDDEYFKREIRLMKNKEAALEYHRKKN-FIKCLEN*VAVLE |
Parental | NQNKTLIEELKALKDLYCHK |
NQNKTLIEELK..K.LYCHK | |
Retrocopy | NQNKTLIEELKTVKYLYCHK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Macropus eugenii | ENSMEUG00000007374 | 3 retrocopies |
retro_meug_1195, retro_meug_2029 , retro_meug_596,
|
Rattus norvegicus | ENSRNOG00000013412 | 1 retrocopy |