RetrogeneDB ID: retro_meug_2148

Retrocopy location

• Organism: Wallaby (Macropus eugenii)
• Coordinates: Scaffold95129:859..1262(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: ENSMEUG00000007065
• Aliases: None
• Status: KNOWN_PSEUDOGENE

Parental gene information

• Parental gene symbol: KXD1
• Ensembl ID: ENSMEUG00000013150
• Aliases: None
• Description: KxDL motif containing 1 [Source:HGNC Symbol;Acc:28420]

Sequence

>retro_meug_2148
CTGGACCGATTTGAAAAACCAATGCTCTTGAACTTTAATAACCTTTCCAACGTTCGCGTGCAGCAGATGAGCGAACGCTT
CATACACCACACCAGGACACTGATGGAGATGAAGAAGAATCTGGACAGTATCTTCCGAAGGCTCAGGACTCTGAAAACGA
AGCTATCAAAGCAGTACCCAGATGCTTTTAGTTGTATCCATGAGTCTCCCATTCTGGAGGAGGAAGATGATGATGTGGAC
CCTATCATGGCCAGCTCAGCTACCACCATTGCTACCTCAGAGCAGAGTACTGGGTCATGTGACACAAGCCCAGACATAAT
CTCTCCAGTCCTGAGCCCCGATTTTGAAGATTTATCCCAAAGGATGGCTGGATTCCCCAGGTATGAATGGAGAGAGCCTG
ACA

Alignment

ORF - retro_meug_2148 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 93.43 %
• Parental protein coverage: 77.27 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 1

Retrocopy - Parental Gene Alignment:

Parental  LDRFEKTNEMLLNFNNLSNVRMQQMSERFIHHTRTLMEMKKDLDSIFRRLRTLKTKLSKQYPDAFSYIHE
          LDRFEK...MLLNFNNLSNVR.QQMSERFIHHTRTLMEMKK.LDSIFRRLRTLKTKLSKQYPDAFS.IHE
Retrocopy LDRFEKP--MLLNFNNLSNVRVQQMSERFIHHTRTLMEMKKNLDSIFRRLRTLKTKLSKQYPDAFSCIHE

Parental  SPILEEEDDDVDPIMASSATTIATSEQSTGSCDTSPDIISPVLSPDFEDLSQ-GRLDSPAMNGESLT
          SPILEEEDDDVDPIMASSATTIATSEQSTGSCDTSPDIISPVLSPDFEDLSQ.G.LDSP.MNGESLT
Retrocopy SPILEEEDDDVDPIMASSATTIATSEQSTGSCDTSPDIISPVLSPDFEDLSQ>GWLDSPGMNGESLT

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Macropus eugenii was not studied using RNA-Seq expression data.

ChIP-Seq

Macropus eugenii was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_meug_2148 retrocopy.

TSS

Macropus eugenii was not studied using FANTOM5 data.

Lab

retro_meug_2148 was not experimentally validated.

Homology

Retrocopy orthology:

Macropus eugenii does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 6 parental genes, and 13 retrocopies.

Species	Parental gene accession	Retrocopies number
Bos taurus	ENSBTAG00000010545	1 retrocopy	retro_btau_689,
Echinops telfairi	ENSETEG00000003390	2 retrocopies	retro_etel_1213, retro_etel_2129,
Macropus eugenii	ENSMEUG00000013150	1 retrocopy	retro_meug_2148 ,
Monodelphis domestica	ENSMODG00000003489	1 retrocopy	retro_mdom_1623,
Mus musculus	ENSMUSG00000055553	6 retrocopies	retro_mmus_1117, retro_mmus_3557, retro_mmus_799, retro_mmus_800, retro_mmus_802, retro_mmus_804,
Rattus norvegicus	ENSRNOG00000019971	2 retrocopies	retro_rnor_2808, retro_rnor_812,