RetrogeneDB ID: | retro_meug_320 | ||
Retrocopylocation | Organism: | Wallaby (Macropus eugenii) | |
Coordinates: | Scaffold101226:4180..4507(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | NHP2 | ||
Ensembl ID: | ENSMEUG00000003839 | ||
Aliases: | None | ||
Description: | NHP2 ribonucleoprotein [Source:HGNC Symbol;Acc:14377] |
Percent Identity: | 83.19 % |
Parental protein coverage: | 72.08 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 2 |
Parental | LTRKLYKCIKKAVKQKQIRRGVKEVQKFLNKGEKGIMVLAGDTLPI-EVYCHLPI-MCEDLSMPYAYVPS |
LT.KL.KCIKKA.KQKQI.RGVKEVQKFLN......MVLAGD.LPI.EVYCHLPI.MCED.SMPYAYVPS | |
Retrocopy | LTQKLFKCIKKALKQKQIQRGVKEVQKFLN--KVLLMVLAGDSLPI>EVYCHLPI<MCEDQSMPYAYVPS |
Parental | KTDLGAAAGSKRPTCVIMIKPHEDYQATYDDCLEEVESLPVPL |
K.DLGAAAGSK.PTCVIMIKPHED.QATYDDCLEE.ESLPV.L | |
Retrocopy | KMDLGAAAGSKGPTCVIMIKPHEDHQATYDDCLEEAESLPVTL |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Callithrix jacchus | ENSCJAG00000012244 | 1 retrocopy | |
Homo sapiens | ENSG00000145912 | 2 retrocopies | |
Gorilla gorilla | ENSGGOG00000000015 | 1 retrocopy | |
Macropus eugenii | ENSMEUG00000003839 | 2 retrocopies |
retro_meug_285, retro_meug_320 ,
|
Macaca mulatta | ENSMMUG00000018757 | 1 retrocopy | |
Monodelphis domestica | ENSMODG00000004231 | 1 retrocopy | |
Mus musculus | ENSMUSG00000001056 | 1 retrocopy | |
Oryctolagus cuniculus | ENSOCUG00000016057 | 1 retrocopy | |
Ochotona princeps | ENSOPRG00000007907 | 3 retrocopies | |
Pongo abelii | ENSPPYG00000016105 | 3 retrocopies | |
Rattus norvegicus | ENSRNOG00000004247 | 2 retrocopies | |
Sus scrofa | ENSSSCG00000014032 | 1 retrocopy |