RetrogeneDB ID: | retro_ocun_151 | ||
Retrocopylocation | Organism: | Rabbit (Oryctolagus cuniculus) | |
Coordinates: | 3:104784724..104785186(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSOCUG00000016091 | |
Aliases: | None | ||
Status: | KNOWN_PROTEIN_CODING | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSOCUG00000016057 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 98.69 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | MTKIKSDPDGPEAQGEACGGERTYHELLVNLNPIAQPLASRRLTRKLYKCIKKAVKQKQIRRGVKEVQKF |
MTKIKSDPDGPEAQGEACGGERTY.ELLVNLNPIAQPLA.RRLTRKLYKCIKKAVKQKQIRRGVKEVQKF | |
Retrocopy | MTKIKSDPDGPEAQGEACGGERTYQELLVNLNPIAQPLALRRLTRKLYKCIKKAVKQKQIRRGVKEVQKF |
Parental | VNKGEKGIMVLAGDTLPIEVYCHLPVMCEDRNLPYVYIPSKTDLGAAAGSKRPTCVIMVKPHEEYQEAYD |
VNKGEKGIMVLAGDTLPIEVYCHLPVMCEDRNLPYVYIPSKTDLGAAAGSKRPTCVIMVKPHEEYQEAYD | |
Retrocopy | VNKGEKGIMVLAGDTLPIEVYCHLPVMCEDRNLPYVYIPSKTDLGAAAGSKRPTCVIMVKPHEEYQEAYD |
Parental | ECLEEVQALPSPH |
ECLEEVQALPSPH | |
Retrocopy | ECLEEVQALPSPH |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 9 .99 RPM |
SRP017611_kidney | 0 .10 RPM | 17 .23 RPM |
SRP017611_liver | 0 .00 RPM | 7 .01 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Callithrix jacchus | ENSCJAG00000012244 | 1 retrocopy | |
Homo sapiens | ENSG00000145912 | 2 retrocopies | |
Gorilla gorilla | ENSGGOG00000000015 | 1 retrocopy | |
Macropus eugenii | ENSMEUG00000003839 | 2 retrocopies | |
Macaca mulatta | ENSMMUG00000018757 | 1 retrocopy | |
Monodelphis domestica | ENSMODG00000004231 | 1 retrocopy | |
Mus musculus | ENSMUSG00000001056 | 1 retrocopy | |
Oryctolagus cuniculus | ENSOCUG00000016057 | 1 retrocopy |
retro_ocun_151 ,
|
Ochotona princeps | ENSOPRG00000007907 | 3 retrocopies | |
Pongo abelii | ENSPPYG00000016105 | 3 retrocopies | |
Rattus norvegicus | ENSRNOG00000004247 | 2 retrocopies | |
Sus scrofa | ENSSSCG00000014032 | 1 retrocopy |