RetrogeneDB ID: | retro_meug_350 | ||
Retrocopylocation | Organism: | Wallaby (Macropus eugenii) | |
Coordinates: | Scaffold103849:717..1221(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | CNOT8 | ||
Ensembl ID: | ENSMEUG00000007427 | ||
Aliases: | None | ||
Description: | CCR4-NOT transcription complex, subunit 8 [Source:HGNC Symbol;Acc:9207] |
Percent Identity: | 60.59 % |
Parental protein coverage: | 69.14 % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 2 |
Parental | MPAALVENSQVICEVWASNLEEEMRKIREIVLSYSYIAMDTEFPGVVVRPIGEFRSSIDYQYQLLRCNVD |
M.A.....SQ.I.EV.A.NL.E.M.KI......Y.Y.AMDTEFPGVV.R.IGEFRS..DY..QLLRCNVD | |
Retrocopy | MLASTIDHSQRIYEV*ACNLDEKMKKILQVIRQYNYVAMDTEFPGVVARTIGEFRSNADYECQLLRCNVD |
Parental | LLKIIQLGLTFTNEKGEYPSGINTWQFNFKFNLTEDMYSQDSIDLLANSGLQ-FHKHEEEGIDTLHFAEL |
LLKII.LGLTF.NE.GEYP.G..TWQ.NFKFNLT.DMY...SI.LL..SG.....K.EEE.....HFA.L | |
Retrocopy | LLKIIELGLTFMNEQGEYPPGTSTWQSNFKFNLTKDMYAHNSIELLTTSGMH<LRKDEEERTEMHHFAKL |
Parental | LMTS-GVVLSDSVKWLSFHSGYDFGYMVKL |
L.TS.G.VL....K.LSFHSGY.F....K. | |
Retrocopy | LLTS>GIVLCKGIK*LSFHSGYNFV*LIKI |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Dasypus novemcinctus | ENSDNOG00000014232 | 1 retrocopy | |
Macropus eugenii | ENSMEUG00000007427 | 8 retrocopies |
retro_meug_1667, retro_meug_1677, retro_meug_1931, retro_meug_2053, retro_meug_350 , retro_meug_420, retro_meug_487, retro_meug_88,
|
Ochotona princeps | ENSOPRG00000013065 | 4 retrocopies |