RetrogeneDB ID: | retro_opri_354 | ||
Retrocopylocation | Organism: | Southern American pika (Ochotona princeps) | |
Coordinates: | GeneScaffold_720:208519..209213(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | CNOT8 | ||
Ensembl ID: | ENSOPRG00000013065 | ||
Aliases: | None | ||
Description: | CCR4-NOT transcription complex, subunit 8 [Source:HGNC Symbol;Acc:9207] |
Percent Identity: | 77.25 % |
Parental protein coverage: | 91.7 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 1 |
Parental | DTEFPGVVVRPIGEFRSSIDYQYQLLRCNVDLLKIIQLGLTFTNEKGEYPSGINTWQFNFKFNLTEDMYS |
DTEFPGVV.RPIGEFRS...YQYQLLRCNVDLLKIIQLGLTF..E..E.P....TWQFNFKFNLTEDMY. | |
Retrocopy | DTEFPGVVARPIGEFRSNAGYQYQLLRCNVDLLKIIQLGLTFMDEQ-EIPARNFTWQFNFKFNLTEDMYA |
Parental | QDSIDLLANSGLQFQKHEEEGIDTLHFAELLMTSGVVLCDNVKWLSFHSGYDFGYMVKLLTDSRLPEEEH |
QDSI.LL..SG.QF.KHEE.GI.T..FAELLMTSGVVLC..VKWLSFHSGYDFGY..K.LT.S.LPEEE. | |
Retrocopy | QDSIELLTTSGIQFKKHEEAGIETQYFAELLMTSGVVLCEGVKWLSFHSGYDFGYLIKILTNSNLPEEER |
Parental | -EFFHILNLFFPSIYDVKYLMKSCKNLKGGLQEVADQLDLQRIGRQHQAGSDSLLTGMAFFRMKELFFED |
..FF.IL.LFFP.IYDVKYLM.SCKNLKGGLQE.A.QL.L.RIG.QHQAGSDSLLTGMAFF.M.E.FFED | |
Retrocopy | >DFFEILRLFFPVIYDVKYLMESCKNLKGGLQEDAEQLELERIGPQHQAGSDSLLTGMAFFKMREMFFED |
Parental | SIDDAKYCGRLYGLGTGVAQKQN |
.ID.AKYCG.LYGLG.G....QN | |
Retrocopy | HIDNAKYCGHLYGLGSGSSHVQN |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Dasypus novemcinctus | ENSDNOG00000014232 | 1 retrocopy | |
Macropus eugenii | ENSMEUG00000007427 | 8 retrocopies | |
Ochotona princeps | ENSOPRG00000013065 | 4 retrocopies |