RetrogeneDB ID: retro_meug_388

Retrocopy location

• Organism: Wallaby (Macropus eugenii)
• Coordinates: Scaffold108268:8284..8653(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: None
• Ensembl ID: ENSMEUG00000007201
• Aliases: None
• Description: None

Sequence

>retro_meug_388
CCCAACCTGGCACACTCCCCCTTCTCTGCCCACCCCACAAAGGACCCTGCTGTCCCCACCCTCAGGCATTCACCCAGCCC
TTCTGGGACGCAGCATAAGTGGCCTCCAGGTTTACAGCACTTCAGTCATCAGTTCTGGGAAATCAAGTCACAGCAAAGTG
AGGTGACCTGCATCCTGAATGGAAAGTGGAGCTAGTATGAACTGGTGGATATGTCCCAGGACAATGCCCTACTGGAGATG
AAGACCCTGGCTGGGGACCCCAAAGTCATCCCACCCCAAATAGGCAATGAGAACAAATACTGTGGGGACTATGAGTTTTC
CATGGAGGCTGTGGTACAGGACACCCTACAAAAGTTCCTGAAGCTGGAC

Alignment

ORF - retro_meug_388 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 66.67 %
• Parental protein coverage: 82.43 %
• Number of stop codons detected: 1
• Number of frameshifts detected: 2

Retrocopy - Parental Gene Alignment:

Parental  PSAAAAASSARPA--PAAAALRPSVRPSGP-SMSGLRVYSTSVTGSR-EIKSQQSEVTRILDGKRIQYEL
          P..A....SA.P...PA...LR.S..PSG..S.SGL.VYSTSV..S..EIKSQQSEVT.IL.GK...YEL
Retrocopy PNLAHSPFSAHPTKDPAVPTLRHSPSPSGT>SISGLQVYSTSVISSG<EIKSQQSEVTCILNGKWS*YEL

Parental  VDISQDNALREEMRTLAGDPKAIPPQICNGNQYCGDYELFVEAVEQDTLQEFLKLD
          VD.SQDNAL.E.M.TLAGDPK.IPPQI.N.N.YCGDYE...EAV.QDTLQ.FLKLD
Retrocopy VDMSQDNALLE-MKTLAGDPKVIPPQIGNENKYCGDYEFSMEAVVQDTLQKFLKLD

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Macropus eugenii was not studied using RNA-Seq expression data.

ChIP-Seq

Macropus eugenii was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_meug_388 retrocopy.

TSS

Macropus eugenii was not studied using FANTOM5 data.

Lab

retro_meug_388 was not experimentally validated.

Homology

Retrocopy orthology:

Macropus eugenii does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 7 parental genes, and 7 retrocopies.

Species	Parental gene accession	Retrocopies number
Canis familiaris	ENSCAFG00000012567	1 retrocopy	retro_cfam_1539,
Dasypus novemcinctus	ENSDNOG00000016833	1 retrocopy	retro_dnov_1621,
Homo sapiens	ENSG00000142669	1 retrocopy	retro_hsap_3470,
Macropus eugenii	ENSMEUG00000007073	1 retrocopy	retro_meug_78,
Macropus eugenii	ENSMEUG00000007201	1 retrocopy	retro_meug_388 ,
Nomascus leucogenys	ENSNLEG00000009265	1 retrocopy	retro_nleu_341,
Pan troglodytes	ENSPTRG00000000379	1 retrocopy	retro_ptro_2353,