RetrogeneDB ID: retro_meug_78

Retrocopy location

• Organism: Wallaby (Macropus eugenii)
• Coordinates: GeneScaffold_1773:56172..56481(+)
• Located in intron of: ENSMEUG00000007980

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: SH3BGRL2
• Ensembl ID: ENSMEUG00000007073
• Aliases: None
• Description: SH3 domain binding glutamic acid-rich protein like 2 [Source:HGNC Symbol;Acc:15567]

Sequence

>retro_meug_78
ATAGTCATCTGAGTGTTCATCACCTCCTCCAGCTTTGTGGCGATAAAGAAGAAACAGCAAGACGTAGTTTGTTTTCTGGA
AGCCAACAAGATAGAATTTGAGGAGGTAGACGTCATAATATTGGAGGCGTAAAGTCAGTGGATGTACAGGAACATTCCTT
CAGAAAAAAAACCAACTCAGGGCAATCCAGTGCCACCACAGATATTTAATGGAGATCGATACTGTGGTGATTATGACAGC
TTTTTTGAGTCAAAGGAAAGCAACACAGTCTTTTCATTTGTAGGCCTGAAAGCAAGATTGCCATCAAAG

Alignment

ORF - retro_meug_78 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 77.88 %
• Parental protein coverage: 100. %
• Number of stop codons detected: 2
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  MVIRVFIASSSGFVAXXXKQQDVVRFLEANKIEFEEVDITMSEEQRQWMYKNIPPEKKPAQGNPTPPQIF
          .VI.VFI.SSS.FVA...KQQDVV.FLEANKIEFEEVD....E...QWMY.NIP....P.QGNP.PPQIF
Retrocopy IVI*VFITSSS-FVAIKKKQQDVVCFLEANKIEFEEVDVIILEA*SQWMYRNIPSXXXPTQGNPVPPQIF

Parental  NGDRYCGDYDSFFESKESNTVFSFLGLKARLPSK
          NGDRYCGDYDSFFESKESNTVFSF.GLKARLPSK
Retrocopy NGDRYCGDYDSFFESKESNTVFSFVGLKARLPSK

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Macropus eugenii was not studied using RNA-Seq expression data.

ChIP-Seq

Macropus eugenii was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_meug_78 retrocopy.

TSS

Macropus eugenii was not studied using FANTOM5 data.

Lab

retro_meug_78 was not experimentally validated.

Homology

Retrocopy orthology:

Macropus eugenii does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 4 parental genes, and 6 retrocopies.

Species	Parental gene accession	Retrocopies number
Choloepus hoffmanni	ENSCHOG00000003858	3 retrocopies	retro_chof_1669, retro_chof_2317, retro_chof_682,
Macropus eugenii	ENSMEUG00000007073	1 retrocopy	retro_meug_78 ,
Macropus eugenii	ENSMEUG00000007201	1 retrocopy	retro_meug_388,
Tursiops truncatus	ENSTTRG00000017306	1 retrocopy	retro_ttru_141,