RetrogeneDB ID: retro_meug_565

Retrocopy location

• Organism: Wallaby (Macropus eugenii)
• Coordinates: Scaffold137877:1587..1999(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: WDYHV1
• Ensembl ID: ENSMEUG00000008130
• Aliases: None
• Description: WDYHV motif containing 1 [Source:HGNC Symbol;Acc:25490]

Sequence

>retro_meug_565
AAGCAGCAGGCCCAGACCCGGAGATGGACCTATCATTTGGGATTACCATATTGTTTTGCTTCATGTTTCAAGTGGAGGAC
AGAGTTTTATTTATGATCTTGATACTGTGCTGCCATTTCCATGTCCCTTTGACACTTATGTAGAAAATGCCTTTAAGTCT
AATGATGATCCACAATTTAGAAGAAAATTTAGAGTGATTAGAACAGATTTGTATTTGAAGAACTTTGCATCTGATCAATC
TCACATGAAAGATTCCAGTGGAAACTGGAAAGAGCCTCCTCCTCCCTACCCCTGCATTGAAACTGTAGCTTCAAAAATGA
ACCTGAATGATTTTATCAGTATGAATCCTGAGGTTGGATAGGGAGCTATATACACACTACCTGACTTTGTACATTGATTT
GGCAGTAAGAAC

Alignment

ORF - retro_meug_565 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 90. %
• Parental protein coverage: 68.14 %
• Number of stop codons detected: 2
• Number of frameshifts detected: 1

Retrocopy - Parental Gene Alignment:

Parental  KQQA-RPGDGPIIWDYHVVLLHVSSGGQSFIYDLDTVLPFPCPFDTYVEDAFKSDDDIHPQFRRKFRVIR
          KQQA.RPGDGPIIWDYH.VLLHVSSGGQSFIYDLDTVLPFPCPFDTYVE.AFKS.DD..PQFRRKFRVIR
Retrocopy KQQA>RPGDGPIIWDYHIVLLHVSSGGQSFIYDLDTVLPFPCPFDTYVENAFKSNDD--PQFRRKFRVIR

Parental  ADLYLKNFASDRSHMKDSSGNWKEPPPPYPCIETGXXXMNLNDFISMNPEVGWGAIYTLPDFVHRFGSKN
          .DLYLKNFASD.SHMKDSSGNWKEPPPPYPCIET....MNLNDFISMNPEVG.GAIYTLPDFVH.FGSKN
Retrocopy TDLYLKNFASDQSHMKDSSGNWKEPPPPYPCIETVASKMNLNDFISMNPEVG*GAIYTLPDFVH*FGSKN

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Macropus eugenii was not studied using RNA-Seq expression data.

ChIP-Seq

Macropus eugenii was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_meug_565 retrocopy.

TSS

Macropus eugenii was not studied using FANTOM5 data.

Lab

retro_meug_565 was not experimentally validated.

Homology

Retrocopy orthology:

Macropus eugenii does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 3 parental genes, and 5 retrocopies.

Species	Parental gene accession	Retrocopies number
Callithrix jacchus	ENSCJAG00000000865	1 retrocopy	retro_cjac_4210,
Macropus eugenii	ENSMEUG00000008130	3 retrocopies	retro_meug_1679, retro_meug_491, retro_meug_565 ,
Oryctolagus cuniculus	ENSOCUG00000014201	1 retrocopy	retro_ocun_266,