RetrogeneDB ID: retro_meug_57

Retrocopy location

• Organism: Wallaby (Macropus eugenii)
• Coordinates: GeneScaffold_10213:35566..35972(-)
• Located in intron of: ENSMEUG00000007421

Retrocopy information

• Ensembl ID: ENSMEUG00000007443
• Aliases: None
• Status: KNOWN_PSEUDOGENE

Parental gene information

• Parental gene symbol: TRMT13
• Ensembl ID: ENSMEUG00000013346
• Aliases: None
• Description: tRNA methyltransferase 13 homolog (S. cerevisiae) [Source:HGNC Symbol;Acc:25502]

Sequence

>retro_meug_57
TACTTCATCCAAGATGTTGATGCAGGAGTAGAAGATGAAGCAGAAATTCTTGGTAAGCTGTCCCAATTTCTCCTCTATCT
GAAGAGCAGTTGGAAAACTTAATGAAGAAATTGAGAACAGCCAGTGAAGGTCTGAATTGTACACTTAAAGAACTTATAAT
GTCGCATCCTGCATTGCATGATGTCCTAAATGACCCCAAAATGGTGATTCTGCATTCAAGCACTTGAAACAACAGGCTTC
AATTTTAGGTAACATTGGAAGATTAAATTTACTGGGACCAAGAAGATGCTTTATTGAGTTTGGAGCTGGAAGGGGGAAAT
TGTCTCATTGGGTTGATATTGCCTTACAAGAAGCTGAAAAAGTCTACTTCCTGCTGGTAGAAAGGGAGACCACAAGACTC
AAGATC

Alignment

ORF - retro_meug_57 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 91.3 %
• Parental protein coverage: 54.84 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 2

Retrocopy - Parental Gene Alignment:

Parental  YFIQDINAGLEDETEILDKL-VPISSLSEEQLENLIKKLRKASEGLNCTLKELIMSHPALHDVLNDPK-N
          YFIQD..AG.EDE.EIL.KL.VPIS.LSEEQLENL.KKLR.ASEGLNCTLKELIMSHPALHDVLNDPK.N
Retrocopy YFIQDVDAGVEDEAEILGKL<VPISPLSEEQLENLMKKLRTASEGLNCTLKELIMSHPALHDVLNDPK<N

Parental  GDSAFKHLKQQASILGNIGRLNLLGPRRCFIEFGAGRGKLSHWVDIALQEAEKVYFLLVERETTRFKV
          GDSAFKHLKQQASILGNIGRLNLLGPRRCFIEFGAGRGKLSHWVDIALQEAEKVYFLLVERETTR.K.
Retrocopy GDSAFKHLKQQASILGNIGRLNLLGPRRCFIEFGAGRGKLSHWVDIALQEAEKVYFLLVERETTRLKI

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Macropus eugenii was not studied using RNA-Seq expression data.

ChIP-Seq

Macropus eugenii was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_meug_57 retrocopy.

TSS

Macropus eugenii was not studied using FANTOM5 data.

Lab

retro_meug_57 was not experimentally validated.

Homology

Retrocopy orthology:

Macropus eugenii does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 2 parental genes, and 2 retrocopies.

Species	Parental gene accession	Retrocopies number
Macropus eugenii	ENSMEUG00000013346	1 retrocopy	retro_meug_57 ,
Mustela putorius furo	ENSMPUG00000012169	1 retrocopy	retro_mputfur_1310,