RetrogeneDB ID: retro_mputfur_1310

Retrocopy location

• Organism: Ferret (Mustela putorius furo)
• Coordinates: GL897076.1:3544256..3544543(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: None
• Ensembl ID: ENSMPUG00000012169
• Aliases: None
• Description: None

Sequence

>retro_mputfur_1310
ATGGCGGCTTCTGCGCCCGCCCCGCACACGACTGACTTCCCGGTTGAGGGTCGCTGCAGTTACTATGTGGAAAAGAAGAA
GCGCTTCTCTGCAGGATGGTGGTGGCAGCGGGGAAAAGATTCTGTGGAGAACACGCTGGAGCCGCGGAGGAAGAAAATGC
TCGGAAAAGAATTCTGTGTCCTTTAGATCCAAAACACACAGTATATGAAGATCAACTATCAAAGCATTTGAAAAAGTGTA
ACTCAAGAGAGAAGCCAAAACCTGACTTCTTTATTCAAGATATAAAC

Alignment

ORF - retro_mputfur_1310 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 94.85 %
• Parental protein coverage: 69.85 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 1

Retrocopy - Parental Gene Alignment:

Parental  MAASAPAPHTTDFPVEGRCSYYVE-KKK-RFCRMVVAAGKRFCGEHAGAAEEENARKRILCPLDPKHTVY
          MAASAPAPHTTDFPVEGRCSYYVE.KK....CRMVVAAGKRFCGEHAGAAEEENARKRILCPLDPKHTVY
Retrocopy MAASAPAPHTTDFPVEGRCSYYVEKKKR<LLCRMVVAAGKRFCGEHAGAAEEENARKRILCPLDPKHTVY

Parental  EDQLSKHLKKCNSREKPKPDFFIQDIN
          EDQLSKHLKKCNSREKPKPDFFIQDIN
Retrocopy EDQLSKHLKKCNSREKPKPDFFIQDIN

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Mustela putorius furo was not studied using RNA-Seq expression data.

ChIP-Seq

Mustela putorius furo was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_mputfur_1310 retrocopy.

TSS

Mustela putorius furo was not studied using FANTOM5 data.

Lab

retro_mputfur_1310 was not experimentally validated.

Homology

Retrocopy orthology:

Mustela putorius furo does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 2 parental genes, and 2 retrocopies.

Species	Parental gene accession	Retrocopies number
Macropus eugenii	ENSMEUG00000013346	1 retrocopy	retro_meug_57,
Mustela putorius furo	ENSMPUG00000012169	1 retrocopy	retro_mputfur_1310 ,