RetrogeneDB ID: retro_meug_707

Retrocopy location

• Organism: Wallaby (Macropus eugenii)
• Coordinates: Scaffold165470:352..1055(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: None
• Ensembl ID: ENSMEUG00000001969
• Aliases: None
• Description: None

Sequence

>retro_meug_707
ACTGCCAATGCAGAGAGGAATGAAGAAAAGATCATTGGTGGTCAAACGTGCATTCCCAACTCCCAGCCCTGGCAAGCAGC
ACTCTTAGCCAATCGGAAATTCCTCTGTGGAGGTGTCCTGCTGTCCAATCGTTAGGTCCTCACAGCAGCTCACTGGAACC
ACTGGAACCGTCAAGTGGTCTCGCAAAAGAACAATATTAGACACCTGGAGCCCTATCAGCAGTCAGTCGGAATGGAGCGC
CTAGTTCCCTAACCCTCCTACAGCCCCAGGACCAGCAACAATAACCTCATGCTCCTCTACCTGGAGAAGCCAGTGAAGCT
GACTGACCAAGTTCAACCCATTCAGCTGGCAAAAATTGTGCCAATCCCAGCACAGACTGGTGTGCGGCTGGGGTACTGCG
TCCAATCCTTTCGCCAAATATCCCGGCACCCTTCAGTGTTTGAAGAGCAGTATCTTTTCTGAGAAAAACTGCAAAAATGC
TTACTACGGAAAAGCCATCACTCCCAGTATGGTGTGTGCTGGGGACGAGAAAGGTGGCAAGGATTCCTGCCAGGGGGACT
CTGGAGGCCCCTTGGTGTGCAATGGGGTCCTACAGGGCCTGGTATCTTGGGGCATGGAACACTGCGCCCTGCCCGGTTTT
CCTGGTGTTTATACCAACCTGTGCTGTTACTGGACCTGGATCTTAAATGAAATGCAGAAAAAC

Alignment

ORF - retro_meug_707 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 79.75 %
• Parental protein coverage: 100.0 %
• Number of stop codons detected: 2
• Number of frameshifts detected: 1

Retrocopy - Parental Gene Alignment:

Parental  TANGREDEEKIIGGYTCIPNSQPWQAALLANRQFRCGGVLLSNRWVLTAAHCNHWNLRVVLGKHNIRLLE
          TAN....EEKIIGG.TCIPNSQPWQAALLANR.F.CGGVLLSNR.VLTAAH.NHWN..VV..K.NIR.LE
Retrocopy TANAERNEEKIIGGQTCIPNSQPWQAALLANRKFLCGGVLLSNR*VLTAAHWNHWNRQVVSQKNNIRHLE

Parental  PSQQSVGVERRVPHPSYSPRTSNNDLMLLYLEKPVKLTNQVK-PIQLAKNCANPGTDCLVSGWGTVSSPF
          P.QQSVG.ER.VP.PSYSPRTSNN.LMLLYLEKPVKLT.QV..P....K.C.......LV.GWGT.S.PF
Retrocopy PYQQSVGMERLVP*PSYSPRTSNNNLMLLYLEKPVKLTDQVQ>PFSWQKLCQSQHR--LVCGWGTASNPF

Parental  ARYPSTLQCLKISIFSEESCKNAYYGKAITPGMVCAGDKKGGKDSCQGDSGGPLVCNGVLQGLVSWGMEH
          A.YP.TLQCLK.SIFSE..CKNAYYGKAITP.MVCAGD.KGGKDSCQGDSGGPLVCNGVLQGLVSWGMEH
Retrocopy AKYPGTLQCLKSSIFSEKNCKNAYYGKAITPSMVCAGDEKGGKDSCQGDSGGPLVCNGVLQGLVSWGMEH

Parental  CALPGYPGVYTNLCRYRTWILNEMQKN
          CALPG.PGVYTNLC.Y.TWILNEMQKN
Retrocopy CALPGFPGVYTNLCCYWTWILNEMQKN

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Macropus eugenii was not studied using RNA-Seq expression data.

ChIP-Seq

Macropus eugenii was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_meug_707 retrocopy.

TSS

Macropus eugenii was not studied using FANTOM5 data.

Lab

retro_meug_707 was not experimentally validated.

Homology

Retrocopy orthology:

Macropus eugenii does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 3 parental genes, and 9 retrocopies.

Species	Parental gene accession	Retrocopies number
Macropus eugenii	ENSMEUG00000001969	7 retrocopies	retro_meug_1025, retro_meug_1028, retro_meug_1038, retro_meug_1108, retro_meug_1959, retro_meug_2018, retro_meug_707 ,
Macropus eugenii	ENSMEUG00000014123	1 retrocopy	retro_meug_1950,
Monodelphis domestica	ENSMODG00000020815	1 retrocopy	retro_mdom_1516,