RetrogeneDB ID: | retro_meug_770 | ||
Retrocopylocation | Organism: | Wallaby (Macropus eugenii) | |
Coordinates: | Scaffold18371:13919..14395(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RAB25 | ||
Ensembl ID: | ENSMEUG00000016598 | ||
Aliases: | None | ||
Description: | RAB25, member RAS oncogene family [Source:HGNC Symbol;Acc:18238] |
Percent Identity: | 83.75 % |
Parental protein coverage: | 74.65 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 1 |
Parental | MGNGAEEDYNFVFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVLLGTAAVKAQIWDTAG |
M.NGAEEDYNFVF.VVLIGESGVGKTNLLSRFTRNEFSH.S.T.IGVEFST.TVLLGTA.VKAQIWD.AG | |
Retrocopy | MENGAEEDYNFVFNVVLIGESGVGKTNLLSRFTRNEFSHNSWTPIGVEFST*TVLLGTAVVKAQIWDIAG |
Parental | LERYRAITSAYYRGAVGALLVFDLTKHQT-YAVVERWLKELYDHAEATIVVMLVGNKSDLSNAREVPTEE |
...Y.AITS.YYRGAVGALLV.DLTKHQT.YAVVE.WLKELYDH.EATIVVMLVGNKSDLS..REVPTEE | |
Retrocopy | WGQYHAITSVYYRGAVGALLVYDLTKHQT<YAVVEHWLKELYDHVEATIVVMLVGNKSDLSHKREVPTEE |
Parental | ARMFAENNGLLFIETSALDS |
ARMFAENNG.L....S.L.S | |
Retrocopy | ARMFAENNGIL*SWPSKLSS |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Callithrix jacchus | ENSCJAG00000007715 | 1 retrocopy | |
Macropus eugenii | ENSMEUG00000010489 | 2 retrocopies | |
Macropus eugenii | ENSMEUG00000016598 | 2 retrocopies |
retro_meug_1684, retro_meug_770 ,
|
Monodelphis domestica | ENSMODG00000016955 | 1 retrocopy |