RetrogeneDB ID: | retro_meug_945 | ||
Retrocopylocation | Organism: | Wallaby (Macropus eugenii) | |
Coordinates: | Scaffold24081:18768..19398(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | PGAM2 | ||
Ensembl ID: | ENSMEUG00000012920 | ||
Aliases: | None | ||
Description: | phosphoglycerate mutase 2 (muscle) [Source:HGNC Symbol;Acc:8889] |
Percent Identity: | 65.73 % |
Parental protein coverage: | 83.4 % |
Number of stop codons detected: | 5 |
Number of frameshifts detected | 2 |
Parental | QAVKEAGLQFDICYTSVLKRAIRTLWIIMDGIDQMWLPVIRTWRLNERHYGGLTGLNKAETAAKHGEAQV |
QA...AG..FDIC.TSV.KRAI.TLW.....IDQMWL.V.RT..LNE..YGGLTGLNKAETA.KHGEA.V | |
Retrocopy | QALQDAGYEFDICFTSVQKRAILTLWTVLYAIDQMWLLVVRT*CLNEQQYGGLTGLNKAETATKHGEA*V |
Parental | KIWRRSFDIPPPPMDETHPYHAVISKERRYASLKPGELPTCESLKDTIAR-ALPFWNEQIVPQIKSGKRV |
KIW..S.DI.PPP....HP....ISK...YA.L....L..CE.LKDTIAR.ALPFWNE.IV.QIK.GK.V | |
Retrocopy | KIW**SYDILPPPVEPDHPFYRNISKDLCYADLTEDQLLSCENLKDTIAR<ALPFWNEEIVSQIKEGKPV |
Parental | LIAAHGNSLRGIVKHLEGMSDEAIMELNLPTGIPIVYELDDHLK-PTKPMQFLGDEETVRKAMEAVAAQG |
LIAAHGNSL..IVKHLE..S.EAIM.LNLPTGIPI..ELD...K.P..P.......ET..KAMEAVAAQG | |
Retrocopy | LIAAHGNSL*RIVKHLESLSEEAIMKLNLPTGIPIMCELDKNMK>PSSPCSS-SSSETACKAMEAVAAQG |
Parental | KAK |
K.K | |
Retrocopy | KTK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Dasypus novemcinctus | ENSDNOG00000024480 | 1 retrocopy | |
Macropus eugenii | ENSMEUG00000012920 | 8 retrocopies |
retro_meug_1044, retro_meug_1303, retro_meug_1636, retro_meug_1838, retro_meug_202, retro_meug_2152, retro_meug_251, retro_meug_945 ,
|
Otolemur garnettii | ENSOGAG00000006713 | 1 retrocopy | |
Procavia capensis | ENSPCAG00000002181 | 1 retrocopy | |
Rattus norvegicus | ENSRNOG00000013532 | 1 retrocopy | |
Tupaia belangeri | ENSTBEG00000004587 | 1 retrocopy | |
Drosophila melanogaster | FBgn0014869 | 1 retrocopy |