RetrogeneDB ID: | retro_meug_1838 | ||
Retrocopylocation | Organism: | Wallaby (Macropus eugenii) | |
Coordinates: | Scaffold64358:1359..1881(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | PGAM2 | ||
Ensembl ID: | ENSMEUG00000012920 | ||
Aliases: | None | ||
Description: | phosphoglycerate mutase 2 (muscle) [Source:HGNC Symbol;Acc:8889] |
Percent Identity: | 74.14 % |
Parental protein coverage: | 68.77 % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 0 |
Parental | VKEAGLQFDICYTSVLKRAIRTLWIIMDGIDQMWLPVIRTWRLNERHYGGLTGLNKAETAAKHGEAQVKI |
...AG..FDIC.TS..KRAIRTLW...D.IDQ.WLPV.RTWRLNERHYGGLTGLNKAETA.KHGEAQ.KI | |
Retrocopy | LRSAGY*FDICFTSLQKRAIRTLWTVQDTIDQTWLPVVRTWRLNERHYGGLTGLNKAETAPKHGEAQEKI |
Parental | WRRSFDIPPPPMDETHPYHAVISKERRYASLKPGELPTCESLKDTIARALPFWNEQIVPQIKSGKRVLIA |
W..S.DIPPPPM...HP....ISK...YA.L.....P.CESLKDTIA.ALPFWNE.IVPQIK.GK.VLIA | |
Retrocopy | W**SYDIPPPPMEPDHPFYSNISKDHCYAALTEDQWPSCESLKDTIAGALPFWNEVIVPQIKEGKCVLIA |
Parental | AHGNSLRGIVKHLEGMSDEAIMELNLPTGIPIVY |
AHGNSL.GIVKH.E..S.EAIMELNLPTGIPIVY | |
Retrocopy | AHGNSLLGIVKHFESLSEEAIMELNLPTGIPIVY |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Dasypus novemcinctus | ENSDNOG00000024480 | 1 retrocopy | |
Macropus eugenii | ENSMEUG00000012920 | 8 retrocopies |
retro_meug_1044, retro_meug_1303, retro_meug_1636, retro_meug_1838 , retro_meug_202, retro_meug_2152, retro_meug_251, retro_meug_945,
|
Otolemur garnettii | ENSOGAG00000006713 | 1 retrocopy | |
Procavia capensis | ENSPCAG00000002181 | 1 retrocopy | |
Rattus norvegicus | ENSRNOG00000013532 | 1 retrocopy | |
Tupaia belangeri | ENSTBEG00000004587 | 1 retrocopy | |
Drosophila melanogaster | FBgn0014869 | 1 retrocopy |