RetrogeneDB ID: retro_mgal_16

Retrocopy location

• Organism: Turkey (Meleagris gallopavo)
• Coordinates: GL426607.1:2211..2610(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: None
• Ensembl ID: ENSMGAG00000011960
• Aliases: None
• Description: None

Sequence

>retro_mgal_16
TTTTTTCTTTCCTATTTAAAGGAAGAGCCAAGGCTGGATGTTCTGATAAATAATGCAGGGATATTCCAGTGTCCATACAT
GAAGACAGAGGATGGCTTTGAGATGCAATTTGGTGTAAACCACTTGGGTCACTTCTTGCTCACCAACCTTCTTCTGGGCC
TCCTCAAAAATTCTGCTCCGAGCAGGATTGTGGTAGTATCCTCAAAGCTTTACAAGTACGGAGAAATCAACTTTGAAGAC
TTGAACAGTGAAATAAGTTACAATAAAAGCTTTTGTTACAGCCGGAGTAAACTGGCTAACATACTATTTGCAAGGGAGCT
AGCCCGTCGTTTGGAAGGGACAGGAGTCACTGTCAATTCACTTCATCCGGGTATTGTCAGAACAAATTTAGGGAGACAT

Alignment

ORF - retro_mgal_16 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 65.41 %
• Parental protein coverage: 50.96 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  FANSFLAEEKELHILINNAGVMLCPYSKTADGFEMHLGVNHLGHFLLTFLLLERLKQSAPSRIVNVSSLA
          F..S.L.EE..L..LINNAG...CPY.KT.DGFEM..GVNHLGHFLLT.LLL..LK.SAPSRIV.VSS..
Retrocopy FFLSYLKEEPRLDVLINNAGIFQCPYMKTEDGFEMQFGVNHLGHFLLTNLLLGLLKNSAPSRIVVVSSKL

Parental  HHGGRIRFHDLNGEKSYNRGLAYCHSKLANVLFTRELARRLQGTKVTANSLHPGSVHSELVRH
          ...G.I.F.DLN.E.SYN....Y..SKLAN.LF.RELARRL.GT.VT.NSLHPG.V...L.RH
Retrocopy YKYGEINFEDLNSEISYNKSFCYSRSKLANILFARELARRLEGTGVTVNSLHPGIVRTNLGRH

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Meleagris gallopavo was not studied using RNA-Seq expression data.

ChIP-Seq

Meleagris gallopavo was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_mgal_16 retrocopy.

TSS

Meleagris gallopavo was not studied using FANTOM5 data.

Lab

retro_mgal_16 was not experimentally validated.

Homology

Retrocopy orthology:

Retrocopy retro_mgal_16 has 0 orthologous retrocopies within neognath group .

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Parental genes homology:

Parental genes homology involve 13 parental genes, and 13 retrocopies.

Species	Parental gene accession	Retrocopies number
Ailuropoda melanoleuca	ENSAMEG00000008036	1 retrocopy	retro_amel_673,
Canis familiaris	ENSCAFG00000016446	1 retrocopy	retro_cfam_2068,
Equus caballus	ENSECAG00000015001	1 retrocopy	retro_ecab_1059,
Felis catus	ENSFCAG00000014092	1 retrocopy	retro_fcat_1910,
Loxodonta africana	ENSLAFG00000022637	1 retrocopy	retro_lafr_847,
Macropus eugenii	ENSMEUG00000001473	1 retrocopy	retro_meug_41,
Meleagris gallopavo	ENSMGAG00000011960	1 retrocopy	retro_mgal_16 ,
Microcebus murinus	ENSMICG00000010855	1 retrocopy	retro_mmur_432,
Ornithorhynchus anatinus	ENSOANG00000015759	1 retrocopy	retro_oana_89,
Procavia capensis	ENSPCAG00000009359	1 retrocopy	retro_pcap_1,
Pelodiscus sinensis	ENSPSIG00000010721	1 retrocopy	retro_psin_24,
Sarcophilus harrisii	ENSSHAG00000012445	1 retrocopy	retro_shar_41,
Drosophila melanogaster	FBgn0033203	1 retrocopy	retro_dmel_79,