RetrogeneDB ID: | retro_pcap_1 | ||
Retrocopylocation | Organism: | Hyrax (Procavia capensis) | |
Coordinates: | GeneScaffold_7657:13787..14405(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSPCAG00000018827 | |
Aliases: | None | ||
Status: | KNOWN_PROTEIN_CODING | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RDH12 | ||
Ensembl ID: | ENSPCAG00000009359 | ||
Aliases: | None | ||
Description: | retinol dehydrogenase 12 (all-trans/9-cis/11-cis) [Source:HGNC Symbol;Acc:19977] |
Percent Identity: | 56.05 % |
Parental protein coverage: | 55.23 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | EEKQLHILINNAGVMMCPYSKTADGFETHLGVNHLGHFLLTYLLLERLKESAPARVVNLSSVVHHAGKIH |
EE..L..LINNAGV..CPY.KT.DGFE...GVNHLGHFLLT.LLL..LK.SAP.R.V..SS.....G.I. | |
Retrocopy | EEPRLDVLINNAGVFQCPYMKTEDGFEMQFGVNHLGHFLLTNLLLGLLKSSAPSRIVVVSSRLYKYGDIN |
Parental | FHDLQGEKRYSRCFAYCHSKLANVLFTRQLAKKLQGTGVTTYVVHPGIVRSELVRHSSLLCLLWRLFSPL |
F.DL..E..Y...F.Y..SKLAN.LFTR.LA..L.GT.VT..V.HPGIVR..L.RH.....L...LF..L | |
Retrocopy | FEDLNCEQSYNKGFCYSRSKLANILFTRELARRLEGTNVTVNVLHPGIVRTNLGRHINIPLLVKPLFNLL |
Parental | ----VKSAREGAQTSTH |
.....K...EGAQTS.. | |
Retrocopy | SWAFFKTPLEGAQTSVY |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000008036 | 1 retrocopy | |
Canis familiaris | ENSCAFG00000016446 | 1 retrocopy | |
Equus caballus | ENSECAG00000015001 | 1 retrocopy | |
Felis catus | ENSFCAG00000014092 | 1 retrocopy | |
Loxodonta africana | ENSLAFG00000022637 | 1 retrocopy | |
Macropus eugenii | ENSMEUG00000001473 | 1 retrocopy | |
Meleagris gallopavo | ENSMGAG00000011960 | 1 retrocopy | |
Microcebus murinus | ENSMICG00000010855 | 1 retrocopy | |
Ornithorhynchus anatinus | ENSOANG00000015759 | 1 retrocopy | |
Procavia capensis | ENSPCAG00000009359 | 1 retrocopy |
retro_pcap_1 ,
|
Pelodiscus sinensis | ENSPSIG00000010721 | 1 retrocopy | |
Sarcophilus harrisii | ENSSHAG00000012445 | 1 retrocopy | |
Drosophila melanogaster | FBgn0033203 | 1 retrocopy |