RetrogeneDB ID: retro_mluc_1049

Retrocopy location

• Organism: Microbat (Myotis lucifugus)
• Coordinates: GL429790:9567873..9568430(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: ENSMLUG00000023287
• Aliases: None
• Status: KNOWN_PSEUDOGENE

Parental gene information

• Parental gene symbol: GALM
• Ensembl ID: ENSMLUG00000015685
• Aliases: None
• Description: None

Sequence

>retro_mluc_1049
ATAGTTTCAGTAACCAGATCCGAGTTTGAAGAGCTGTCCATGAGGGCAGGGACAGTGGAGAAGTTCTGGCTGCAGTCAGA
CCTGCTGAGAGTGGACATTATCCCCTGGGGATGCACCATCACAGCCCTAGAGGTCGAAGACAGGCAGAGCAGAGCCTCAG
ATGTGGTGCTTGGCTTTGCCAAGTTGGATGGGATCCTCCAAAAGCAGCCCTACTTTGGAGCAGTCGTTGGCAAGGTGGCC
AACGGAATTGCCAAAGGAACATTCACATTTGATGGGAAGGAGTGTAAGCTGGCCATTAACAATAGGCCCAACAGTCCGCA
TGGAGGCATCAGAAGGTTTGATAAGGTCCTCTGGACTCCCCAGGTGCTGTCAAACGACATCCATTTCTCACAGGCCAGTG
TAACGGTGAGGAAGGTTACCCTGGGGAGTTAAAATTATGGGTAACATACACGCTGGATGGTGAGGAACTTGCGGTCAGCT
ATTGAGCACAGGCCAGTCAGACCAAACCGGTCAATCTGATAAACCATTCTTTTTTCAACCTGGAAAGCCAGGGAAGT

Alignment

ORF - retro_mluc_1049 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 59.89 %
• Parental protein coverage: 53.98 %
• Number of stop codons detected: 1
• Number of frameshifts detected: 1

Retrocopy - Parental Gene Alignment:

Parental  MVSVTRSVFGELPSGAGTVEKFRLQSDQLRVDILSWGCTISALEVKDRQGRASDVVLGFAELEGGLNSAP
          .VSVTRS.F.EL...AGTVEKF.LQSD.LRVDI..WGCTI.ALEV.DRQ.RASDVVLGFA.L.G.L...P
Retrocopy IVSVTRSEFEELSMRAGTVEKFWLQSDLLRVDIIPWGCTITALEVEDRQSRASDVVLGFAKLDGILQKQP

Parental  VAGGPQARLQRRKVQGC---GGNQLHIPLNFWRNSYEESFLDFSKVLWTPQVLSNGVQFSRVSP-DGEEG
          ..G............G.....G.......N...NS.......F.KVLWTPQVLSN...FS..S...GEEG
Retrocopy YFGAVVGKVANGIAKGTFTFDGKECKLAINNRPNSPHGGIRRFDKVLWTPQVLSNDIHFSQASV<NGEEG

Parental  YPGELKVWVTYTLDGGELVINYRAQASQTTPVNLTNHSYFNLAGQGS
          YPGELK.WVTYTLDG.EL...Y.AQASQT.PVNL.NHS.FNL..QGS
Retrocopy YPGELKLWVTYTLDGEELAVSY*AQASQTKPVNLINHSFFNLESQGS

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Myotis lucifugus was not studied using RNA-Seq expression data.

ChIP-Seq

Myotis lucifugus was not studied using ChIP-Seq data.

EST

Myotis lucifugus was not studied using EST data.

TSS

Myotis lucifugus was not studied using FANTOM5 data.

Lab

retro_mluc_1049 was not experimentally validated.

Homology

Retrocopy orthology:

Myotis lucifugus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 3 parental genes, and 3 retrocopies.

Species	Parental gene accession	Retrocopies number
Macropus eugenii	ENSMEUG00000015006	1 retrocopy	retro_meug_2094,
Myotis lucifugus	ENSMLUG00000015685	1 retrocopy	retro_mluc_1049 ,
Sus scrofa	ENSSSCG00000008486	1 retrocopy	retro_sscr_147,