RetrogeneDB ID: retro_mluc_1089

Retrocopy location

• Organism: Microbat (Myotis lucifugus)
• Coordinates: GL429794:254363..256814(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: None
• Ensembl ID: ENSMLUG00000011033
• Aliases: None
• Description: None

Sequence

>retro_mluc_1089
ATGGCAGGAGAGTTGGCTGACAAGAAGGACCGTGATGTGTCACCTTCCAAGGAGGAAAGGAAGCGATCTCGGTCACCTGA
CAGAGAACGGGATAGAGACCTGGACCGGAAATCTTCCCCTTCTAAAGACAGAAAGCGGCATCGTTCAAGGGATAGGCGTC
GAGGGGGCAGCCGGTCTCGCTACCGTTCCTGGTCCAAGTCTACGGAAAGAGGACGACGGCACCGAGAGCGAGATAAGGAG
CAGGATCGGAATAAGAAGGACCGAGACCGGGCTAAGTGTGGGCACAGACAGGACAAGGACCGGAAACGATCCCGTTTATC
TCCTGGACAAGGAAAAGACTTTAAATCTCGGAAAGACAGAGACTCCAAGAAGGATGACGAGGATGAACCTGGTGATAAGA
AGCCTAAGGCCCAGCCATTATCCCTAGAGGAACTTCTGGCCAAGAAAAAGGCTGAGGAAGAAGCTGAGGCTACGCCCACG
TTCCCGTCCAAAGCAGAACGAGAGGCGGAAGCCCTGCAGCGGCGGCAGGAGGTGGAGGAGCGGCAGAAGATGCTTGAAGA
AGAGAGGAAGGAAAGGAAGCAGTTTCGAGACTTGGGCAGGGAAATGTTGGAAGACCCTCAGGAGCGAGGACGACGGGAAC
GCAGGGAGAGGATGGGACGGGAGACCAATGGAAACGAGGATGAGGAAGGGCGGCAGAAGATCCGGGAGGAGGAGGATAAG
AGCAAGGAACTGCCTGCCATTAAGGGGCGTTACCTGGGTGGCATTAAGAAGCGGCGCCGAGCGAGGCCTCTCAATGACCG
CAAGTTTGTCTTTGAGTGGGAGGCATCTGAGGACACGTCTACCGACTACAACCCACTGTACAGAGAACGGCACCAGGGGC
AGTTGTCGGGGCGAGGCTTCATGGCAGGCATCAACCTAAAGCAGCAGAAACGAGAACAGTCACGTTTCTATGGAGACCTA
ATGGAGAAGAGGAGGACACTGGAGGAAAAGGAGCAGGAGGAGGCAAGACTCCGCAAACTTCGTAAGAAGGAAGCCAAGCA
GCGCTGAGATGATCGTCATTGGTCCCAGAAGAAGTTAGATGAGATGACAGACAGGGACTGGCGGATCTTCCGTGAGAACT
ACAGCATTACCGCCAAAGGTGGCAAGATCCCTAATCCCATCCGATCATGGAAAGACTCTTCTCTGCCCCCACACATCTTG
GAGGTCATTGATAAGTGTGGCTACAAGGAACCAACACCTATCCAGCGTCAGGCAATTCCCATTGGGCTACAGAATCGTGA
CATCATTGGTGTGGCTGAGACTGGCAGCGGCAAGACAGCAGCTTTCCTTATTCCGTTGCTGGTCTGGATCACTACTCTTC
CCCAAATTGACAGGATCGAAGAGTCGGACCAGGGCCCTTATGCTATCATCCTGGCCCCCACCCGTGAGTTGGCTCAGCAG
ATTGAGGAAGAAACCATCAGGTTTGGGAAGCCACTGGGCATCCGCACTGTGGCTGTCATTGGCGGCGTCTCCAGAGAAGA
CCAGGGCTTCCGGCTGTGCATGGGTTGTGAGATAGTGATTGCTACCCCAGGACGTCTGATCGATGTGCTGGAAAACCGCT
ATCTGGTGCTGAGCTGCTGTGCCCACGTGGTTCTGGATGAGGCAGAGAGGATGGTTCACATGGGTTTTGAACCTGACGTC
CAGAAGATCCTGGAGCACATGCCTGTCCCCAACCAGAAGCCGGACACGGGTGAGGCTGAGGACCCTGAGAAGATGTTGGC
CAACTTTGAGTCAGGAAAACATAAGTACCGCCAAACGGTCATGTTCACGGCCACCATGCCCCCAGCCGTGGAGCGTCTGG
CCCGGAGCTATCTTCGGCGACCTGCCGTGGTGTACAGCGGCTCTGCAGGCAAGCCCCAGGAACGCGTGGAACAGAAGGTC
TTCCTCATGTCAGAGTCAGAGAAGAGGAAAACGCTGCTGGCAATCTTGGAGCAAGGCTTTGACCCACCCATCATCATTTT
CCTCAACCAGAAGAAAGGCTGTGATGTTTTGGCCAAATCCCTGGAGAAGATGGGGTACAATGTTTGTACGTTGCATGGTG
GAAAAGGCCAGGAGCAGCGAGAATTTGCACTGTCTAACCTCAAGGCTGGGGCCAAGGACATTTTGGTGGCTACAGATGTG
GCAGGTCGTGGTATCGACATCCAAGATGTGTCTATGGAGGTCAACTATGATATGGCCAAAAACATTGAAGATTATATCCA
CCGCATTGGCCGCACGGGACGAGCAGGCAAGAGTGGTGTGGCCATCACCTTCCTCACCAAAGAGGATTCTGCTGTGTTCT
ATGAGCTGAAGCAAGCCATCCTGGAGAGCCCGGTGTCTTCCTGCCCCCCAGAGCTAACCAACCACCCAGATGCCCAGCAC
AAACCAGGCACCATCCTCACCAAGAAGCGCCGGGAAGAGACCATCTTTGCC

Alignment

ORF - retro_mluc_1089 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 93.28 %
• Parental protein coverage: 100. %
• Number of stop codons detected: 1
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  MAGELADKKDRDVSPSKEERKRSRSPDRERDRDRDRKSSPSKDRKRHRSRDRRRGGSRSRSRSRSKSTER
          MAGELADKKDRDVSPSKEERKRSRSPDRERDRD.DRKSSPSKDRKRHRSRDRRRGGSRSR.RS.SKSTER
Retrocopy MAGELADKKDRDVSPSKEERKRSRSPDRERDRDLDRKSSPSKDRKRHRSRDRRRGGSRSRYRSWSKSTER

Parental  DRRHRERDKERDRNKKDRDRDKDGHRRDKDRKRSSLSPGRGKDFKSRKDRDSKKDDEDEHGDKKPKAQPL
          .RRHRERDKE.DRNKKDRDR.K.GHR.DKDRKRS.LSPG.GKDFKSRKDRDSKKDDEDE.GDKKPKAQPL
Retrocopy GRRHRERDKEQDRNKKDRDRAKCGHRQDKDRKRSRLSPGQGKDFKSRKDRDSKKDDEDEPGDKKPKAQPL

Parental  SLEELLAKKKAEEEAEAKPKFLSKAEREAEALKRRQQEVEERQKMLEEERKKRKQFQDLGRKMLEDPQER
          SLEELLAKKKAEEEAEA.P.F.SKAEREAEAL.RRQ.EVEERQKMLEEERK.RKQF.DLGR.MLEDPQER
Retrocopy SLEELLAKKKAEEEAEATPTFPSKAEREAEALQRRQ-EVEERQKMLEEERKERKQFRDLGREMLEDPQER

Parental  ERRERRERMERETNGNEDEEGRQKIREEKDKSKELHAIKERYLGGIKKRRRTRHLNDRKFVFEWDASEDT
          .RRERRERM.RETNGNEDEEGRQKIREE.DKSKEL.AIK.RYLGGIKKRRR.R.LNDRKFVFEW.ASEDT
Retrocopy GRRERRERMGRETNGNEDEEGRQKIREEEDKSKELPAIKGRYLGGIKKRRRARPLNDRKFVFEWEASEDT

Parental  SIDYNPLYKERHQVQLLGRGFIAGIDLKQQKREQSRFYGDLMEKRRTLEEKEQEEARLRKLRKKEAKQRW
          S.DYNPLY.ERHQ.QL.GRGF.AGI.LKQQKREQSRFYGDLMEKRRTLEEKEQEEARLRKLRKKEAKQR.
Retrocopy STDYNPLYRERHQGQLSGRGFMAGINLKQQKREQSRFYGDLMEKRRTLEEKEQEEARLRKLRKKEAKQR*

Parental  DDRHWSQKKLDEMTDRDWRIFREDYSITTKGGKIPNPIRSWKDSSLPPHILEVIDKCGYKEPTPIQRQAI
          DDRHWSQKKLDEMTDRDWRIFRE.YSIT.KGGKIPNPIRSWKDSSLPPHILEVIDKCGYKEPTPIQRQAI
Retrocopy DDRHWSQKKLDEMTDRDWRIFRENYSITAKGGKIPNPIRSWKDSSLPPHILEVIDKCGYKEPTPIQRQAI

Parental  PIGLQNRDIIGVAETGSGKTAAFLIPLLVWITTLPKIDRIEESDQGPYAIILAPTRELAQQIEEETIKFG
          PIGLQNRDIIGVAETGSGKTAAFLIPLLVWITTLP.IDRIEESDQGPYAIILAPTRELAQQIEEETI.FG
Retrocopy PIGLQNRDIIGVAETGSGKTAAFLIPLLVWITTLPQIDRIEESDQGPYAIILAPTRELAQQIEEETIRFG

Parental  KPLGIRTVAVIGGISREDQGFRLRMGCEIVIATPGRLIDVLENRYLVLSRCTYVVLDEADRMIDMGFEPD
          KPLGIRTVAVIGG.SREDQGFRL.MGCEIVIATPGRLIDVLENRYLVLS.C..VVLDEA.RM..MGFEPD
Retrocopy KPLGIRTVAVIGGVSREDQGFRLCMGCEIVIATPGRLIDVLENRYLVLSCCAHVVLDEAERMVHMGFEPD

Parental  VQKILEHMPVTNQKPDTDEAEDPEKMLANFESGKHKYRQTVMFTATMPPAVERLARSYLRRPAVVYIGSA
          VQKILEHMPV.NQKPDT.EAEDPEKMLANFESGKHKYRQTVMFTATMPPAVERLARSYLRRPAVVY.GSA
Retrocopy VQKILEHMPVPNQKPDTGEAEDPEKMLANFESGKHKYRQTVMFTATMPPAVERLARSYLRRPAVVYSGSA

Parental  GKPHERVEQKVFLMSESEKRKKLLAILEQGFDPPIIIFVNQKKGCDVLAKSLEKMGYNACTLHGGKGQEQ
          GKP.ERVEQKVFLMSESEKRK.LLAILEQGFDPPIIIF.NQKKGCDVLAKSLEKMGYN.CTLHGGKGQEQ
Retrocopy GKPQERVEQKVFLMSESEKRKTLLAILEQGFDPPIIIFLNQKKGCDVLAKSLEKMGYNVCTLHGGKGQEQ

Parental  REFALSNLKAGAKDILVATDVAGRGIDIQDVSMVVNYDMAKNIEDYIHRIGRTGRAGKSGVAITFLTKED
          REFALSNLKAGAKDILVATDVAGRGIDIQDVSM.VNYDMAKNIEDYIHRIGRTGRAGKSGVAITFLTKED
Retrocopy REFALSNLKAGAKDILVATDVAGRGIDIQDVSMEVNYDMAKNIEDYIHRIGRTGRAGKSGVAITFLTKED

Parental  SAVFYELKQAILESPVSSCPPELANHPDAQHKPGTILTKKRREETIFA
          SAVFYELKQAILESPVSSCPPEL.NHPDAQHKPGTILTKKRREETIFA
Retrocopy SAVFYELKQAILESPVSSCPPELTNHPDAQHKPGTILTKKRREETIFA

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Myotis lucifugus was not studied using RNA-Seq expression data.

ChIP-Seq

Myotis lucifugus was not studied using ChIP-Seq data.

EST

Myotis lucifugus was not studied using EST data.

TSS

Myotis lucifugus was not studied using FANTOM5 data.

Lab

retro_mluc_1089 was not experimentally validated.

Homology

Retrocopy orthology:

Myotis lucifugus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

---

Parental genes homology:

Parental genes homology involve 2 parental genes, and 3 retrocopies.

Species	Parental gene accession	Retrocopies number
Myotis lucifugus	ENSMLUG00000011033	2 retrocopies	retro_mluc_1089 , retro_mluc_344,
Pongo abelii	ENSPPYG00000004468	1 retrocopy	retro_pabe_842,