RetrogeneDB ID: retro_mluc_344

Retrocopy location

• Organism: Microbat (Myotis lucifugus)
• Coordinates: GL429776:11092552..11095012(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: ENSMLUG00000003683
• Aliases: None
• Status: KNOWN_PROTEIN_CODING

Parental gene information

• Parental gene symbol: None
• Ensembl ID: ENSMLUG00000011033
• Aliases: None
• Description: None

Sequence

>retro_mluc_344
ATGGCAGGAGAGTTGGCTGACAAGAAGGACCGTGATGTGTCACCTTCCAAGGAGGAAAGGAAGCGATCTTGGTCACCTGA
CAGAGAACGGGATAGAGACCAGGATCGGAAATCTTCCCCTTCTAAAGACAGAAAGTGGCATCGGTCAAGGGATAGGCATC
GAGGGGGAAGCCGGTCTCGCTCCCGTTCCCGGTCCAAGTCTATGGGAAGAGAACGACGGCACCGGCACCGAGAGCGAGAT
AAGGAGCGGGATCGGAATAAGAAGGACCGAGATCAGGATAAGGATGGGCACAGACGGGACAAGGACCGGAAACGATCCAG
TTTATCTCCTGGAGGAGGAAAAGATTTTAAATCTTGGAAAGACAGAGACTCTAAGAAGGATGATGAGGATGAACATGGTG
ATGAGAAGCCTAAGGCCCAGTCATTATCCCTAGAGGAACTTCTGGCCAAGAAAAAGGCTGAGGAAGAAGCTGAGGCTAAG
CCCAAGTTCCTGTCCACAGCAGAACGAGAGGCGGAAGCCCTGAAGCGACGGCAGCAGGAGGTGGGAGAGCGGCAGAAGAT
GCTTGAAGAAGAGAGGAAGAAAAGGAAACAGTTTAGAGACTTGGGCAGGAAAATGTTGGAAGACCCTCAGGAGCGAGAAC
GACGGGAACGCAGGGAGAGGATGGAACAGGAGACCAATGGAAATGAGGATGAGGAAGGGCGGCAGAAGATCCGAGAGGAG
AAGGATAGGAGCAAGGAACTGCCTGCCATTCAGGAGCGTTACCTGAGTGGCATTAAGAAGCGGCGCCGAACGAGGCATTT
CAATGACTGCAAGTTTGTCTTTGAGTGGGAGGCATCTGAGGACACATCTATCAACTACAACCCACTGTACAGAGAACGGG
ACCAGGTGCAGTTGTTGGGGCGAGGCTTCATTGAAGGCATCGACCTAAAGCAGCAGAAACGAGAACAGTCACGTTTCTAT
GGAGACCTAATGGAGAAGAGGAGGACACTGGAAGAAAAGGAGCAGGAGGAGGCAAGACTCCGCAAACTTCGTAAGAAGGA
AGCCGAGCAGCGCTGGGATGATCGTCATTGGTCCCAGAAAAAGTTAGATGAGAGGACGGAGAGGGACTGGCGGATCTTCC
GTGAGGACTACAGCATTACCACCAAAGGTGGCAAGATCCCTAATCCCATCCGATCATGGAAAGACTCTTCTCTGCCCCCA
CACATCTTGGAGGTCATTGATAAGTGTGGCTACAAGGAACCAACACCTATCCAGCGTCAGGCAATTCCCATTGGGCTACA
GAATCGTGACATCATTGGTGTGGCTGAGACTGGCAGCGGCAAGACAGCAGCCTTCCTTATCCCGTTGCTGGTCTGGATCA
CTACTCTTCCCAAAATTGACAGGATCGAAGAGTCAGACCAGGGCCCTTATGCTATCATCCTGGCCCCCACCCGTGAGTTG
GCTCAGCAGATTGAGGAAGAAACCATCAAGTTTGGGAAGCCACTAGGCATCCGCACTGTGGCTGTCATTGGCGGCATCTC
CAGAGAAGACCAGGGCTTCAGGCTGCGCATGGGTTGTGAGATTGTGATTGCTACCCCAGGACGTCTGATTGATGTGCTGG
AAAACCGCTATCTGGTGCCGAGCCACTGTACCTACGTGGTTCTAGATGAGGCAGATAGGATGATTGACATGGGTTTTGAG
CCAGACGTCCAGAAGATCCTGGAGTACATGCCTGTCACCAACCAGAAGCCTGACACGGATGAGGCTGAGGACCCTGAGAA
GATGTTGGCCAACTTTGAGTCAGGAAAACATACGTACCGCCAAACGGTCATGTTCACGGCCACCATGCCCCCAGCCGTGG
AGCGTCTGGCACGGAGCTATCTTCGGCGACCTGCTGTGGTGTACATCGGCTCTGCAGGCAAGCCCCATGAACGTGTGGAA
CAGAAGGTCTTTCTCATGTCAGAGTCAGAGAAGAGGAAAAAGCTGCTGGCAATCTTGGAGCAAGGCTTTGACCCACCCAT
CATCATTTTCGTCAACCAGAAGGGCTGTGATGTTTTGGCCAAATCCCTGGAGAAGATGGGGTACAATGCTTGTACATTGC
ATGGTGGAAAAGGCCAGGAGCAGCAAGAATTTGCACTGTCTAACCTCAAGGCTGGGGCCAAGGACATTTTGGTGGCTACA
GATGTGGCAGGTCGTGGTATTGACATCCAAGATGTGTCTATGGTGGTCAACTATAATATGGCCAAAAACATTGAAGATTA
TATTCACCGCATTGGCCGCACGGGACGAGCAGGCAAGAGTGGTGTAGCCATCAACTTCCTCACCAAAGAGGACTCTGCTG
TGTTCTATGAGCTGAAGCAAGCCATCCTGGAGAGCCCGGTGTCTTCCTGCCCCCCAGAGCTAGCCAACCACCCAGATGCC
CAGCACAAACCAGGCACCATCCTCACCAAGAAGCGCCGGGAAGAGACCATCTTTGCCTGA

Alignment

ORF - retro_mluc_344 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 95.12 %
• Parental protein coverage: 100.0 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  MAGELADKKDRDVSPSKEERKRSRSPDRERDRDRDRKSSPSKDRKRHRSRDRRRGGSRSRSRSRSKSTER
          MAGELADKKDRDVSPSKEERKRS.SPDRERDRD.DRKSSPSKDRK.HRSRDR.RGGSRSRSRSRSKS..R
Retrocopy MAGELADKKDRDVSPSKEERKRSWSPDRERDRDQDRKSSPSKDRKWHRSRDRHRGGSRSRSRSRSKSMGR

Parental  DRRHR--ERDKERDRNKKDRDRDKDGHRRDKDRKRSSLSPGRGKDFKSRKDRDSKKDDEDEHGDKKPKAQ
          .RRHR..ERDKERDRNKKDRD.DKDGHRRDKDRKRSSLSPG.GKDFKS.KDRDSKKDDEDEHGD.KPKAQ
Retrocopy ERRHRHRERDKERDRNKKDRDQDKDGHRRDKDRKRSSLSPGGGKDFKSWKDRDSKKDDEDEHGDEKPKAQ

Parental  PLSLEELLAKKKAEEEAEAKPKFLSKAEREAEALKRRQQEVEERQKMLEEERKKRKQFQDLGRKMLEDPQ
          .LSLEELLAKKKAEEEAEAKPKFLS.AEREAEALKRRQQEV.ERQKMLEEERKKRKQF.DLGRKMLEDPQ
Retrocopy SLSLEELLAKKKAEEEAEAKPKFLSTAEREAEALKRRQQEVGERQKMLEEERKKRKQFRDLGRKMLEDPQ

Parental  ERERRERRERMERETNGNEDEEGRQKIREEKDKSKELHAIKERYLGGIKKRRRTRHLNDRKFVFEWDASE
          ERERRERRERME.ETNGNEDEEGRQKIREEKD.SKEL.AI.ERYL.GIKKRRRTRH.ND.KFVFEW.ASE
Retrocopy ERERRERRERMEQETNGNEDEEGRQKIREEKDRSKELPAIQERYLSGIKKRRRTRHFNDCKFVFEWEASE

Parental  DTSIDYNPLYKERHQVQLLGRGFIAGIDLKQQKREQSRFYGDLMEKRRTLEEKEQEEARLRKLRKKEAKQ
          DTSI.YNPLY.ER.QVQLLGRGFI.GIDLKQQKREQSRFYGDLMEKRRTLEEKEQEEARLRKLRKKEA.Q
Retrocopy DTSINYNPLYRERDQVQLLGRGFIEGIDLKQQKREQSRFYGDLMEKRRTLEEKEQEEARLRKLRKKEAEQ

Parental  RWDDRHWSQKKLDEMTDRDWRIFREDYSITTKGGKIPNPIRSWKDSSLPPHILEVIDKCGYKEPTPIQRQ
          RWDDRHWSQKKLDE.T.RDWRIFREDYSITTKGGKIPNPIRSWKDSSLPPHILEVIDKCGYKEPTPIQRQ
Retrocopy RWDDRHWSQKKLDERTERDWRIFREDYSITTKGGKIPNPIRSWKDSSLPPHILEVIDKCGYKEPTPIQRQ

Parental  AIPIGLQNRDIIGVAETGSGKTAAFLIPLLVWITTLPKIDRIEESDQGPYAIILAPTRELAQQIEEETIK
          AIPIGLQNRDIIGVAETGSGKTAAFLIPLLVWITTLPKIDRIEESDQGPYAIILAPTRELAQQIEEETIK
Retrocopy AIPIGLQNRDIIGVAETGSGKTAAFLIPLLVWITTLPKIDRIEESDQGPYAIILAPTRELAQQIEEETIK

Parental  FGKPLGIRTVAVIGGISREDQGFRLRMGCEIVIATPGRLIDVLENRYLVLSRCTYVVLDEADRMIDMGFE
          FGKPLGIRTVAVIGGISREDQGFRLRMGCEIVIATPGRLIDVLENRYLV.S.CTYVVLDEADRMIDMGFE
Retrocopy FGKPLGIRTVAVIGGISREDQGFRLRMGCEIVIATPGRLIDVLENRYLVPSHCTYVVLDEADRMIDMGFE

Parental  PDVQKILEHMPVTNQKPDTDEAEDPEKMLANFESGKHKYRQTVMFTATMPPAVERLARSYLRRPAVVYIG
          PDVQKILE.MPVTNQKPDTDEAEDPEKMLANFESGKH.YRQTVMFTATMPPAVERLARSYLRRPAVVYIG
Retrocopy PDVQKILEYMPVTNQKPDTDEAEDPEKMLANFESGKHTYRQTVMFTATMPPAVERLARSYLRRPAVVYIG

Parental  SAGKPHERVEQKVFLMSESEKRKKLLAILEQGFDPPIIIFVNQKKGCDVLAKSLEKMGYNACTLHGGKGQ
          SAGKPHERVEQKVFLMSESEKRKKLLAILEQGFDPPIIIFVNQ.KGCDVLAKSLEKMGYNACTLHGGKGQ
Retrocopy SAGKPHERVEQKVFLMSESEKRKKLLAILEQGFDPPIIIFVNQ-KGCDVLAKSLEKMGYNACTLHGGKGQ

Parental  EQREFALSNLKAGAKDILVATDVAGRGIDIQDVSMVVNYDMAKNIEDYIHRIGRTGRAGKSGVAITFLTK
          EQ.EFALSNLKAGAKDILVATDVAGRGIDIQDVSMVVNY.MAKNIEDYIHRIGRTGRAGKSGVAI.FLTK
Retrocopy EQQEFALSNLKAGAKDILVATDVAGRGIDIQDVSMVVNYNMAKNIEDYIHRIGRTGRAGKSGVAINFLTK

Parental  EDSAVFYELKQAILESPVSSCPPELANHPDAQHKPGTILTKKRREETIFA
          EDSAVFYELKQAILESPVSSCPPELANHPDAQHKPGTILTKKRREETIFA
Retrocopy EDSAVFYELKQAILESPVSSCPPELANHPDAQHKPGTILTKKRREETIFA

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Myotis lucifugus was not studied using RNA-Seq expression data.

ChIP-Seq

Myotis lucifugus was not studied using ChIP-Seq data.

EST

Myotis lucifugus was not studied using EST data.

TSS

Myotis lucifugus was not studied using FANTOM5 data.

Lab

retro_mluc_344 was not experimentally validated.

Homology

Retrocopy orthology:

Myotis lucifugus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 2 parental genes, and 3 retrocopies.

Species	Parental gene accession	Retrocopies number
Myotis lucifugus	ENSMLUG00000011033	2 retrocopies	retro_mluc_1089, retro_mluc_344 ,
Pongo abelii	ENSPPYG00000004468	1 retrocopy	retro_pabe_842,