RetrogeneDB ID: retro_mluc_1121

Retrocopy location

• Organism: Microbat (Myotis lucifugus)
• Coordinates: GL429796:3931471..3932280(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: ENSMLUG00000028305
• Aliases: None
• Status: KNOWN_PSEUDOGENE

Parental gene information

• Parental gene symbol: DUSP5
• Ensembl ID: ENSMLUG00000013773
• Aliases: None
• Description: Dual specificity protein phosphatase [Source:UniProtKB/TrEMBL;Acc:G1PNK3]

Sequence

>retro_mluc_1121
TGCTGGCCTGCCTGCCCGCCCCAGGTTTGCTTCCTCAAAGGCGGATAGGAGACTTTCTACTCAGAATATCCTGATTGTTG
CATGGACATAGAACCCATCTCAGAAGAGAAGATTGAGACCGAGAGAGCCCTTATCAGCCAGTGTAGGAAACCAGTACTCA
GCATCAGCTACAGGCCAGCTTATGACCAAGGCGGCCCAGTTGAAATCCTTCCATTCCTCTACCTTAGAAGTGGCTACTAT
GCATCCAAATGCGAGTTCCTCGCCAACCTGCACATCACAGCCCTGCTGAATGTCTCTTGGGGAACCTCCGAGGCCTGCAA
GAGCCCCCTACACTACAAATGGATCCCCTGGAAGACAGCCACAGGGCTGACATTAGCTCCCACTTTCAAGAAGCAATAGA
CTTCATTGACTGTGTCAGGGAAACAGGAGGCAAGGTCCTGGTCCACTGTGAGGCTGGGATCTCCTGTTCAGCCACCATCT
GCATGGCTTACCTCATGAAGACCAGGCAGTTTCACCTGAAGGACGCCTTCGATTACATCAAGCAGAGCAGGAGTGCAGTG
TCGCCCAACTTTGGCTTCATGGGTCAGCTCCTGCAGTATGAATCTGAGATCCTGCCTTCCACGCCCACTCCCCAGGCTCC
CTCCTGCCAAGGAGAGGCAGCCAGCTCTTCCTTCACAGCCCATTTGCAGACACTGAGCCCTGATGTGCAGGGTTCCTACT
ACACATTCCCTACCACAGTGCTGGCGCCAGTGCCCACCCACAGGAGGGTCTCAGAGCTCAGCAGGAGTTCCATGGCCAAA
GCCACATCC

Alignment

ORF - retro_mluc_1121 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 85.61 %
• Parental protein coverage: 61.5 %
• Number of stop codons detected: 1
• Number of frameshifts detected: 1

Retrocopy - Parental Gene Alignment:

Parental  CLPAGPRVYFLSVGGYETFYSEYPDCCVDVEPISQEKIETERALISQCGKPVLSISYRPAHDQGGPVEIL
          C.PA.P.......GG.ETFYSEYPDCC.D.EPIS.EKIETERALISQC.KPVLSISYRPA.DQGGPVEIL
Retrocopy CWPACPPQVCFLKGG*ETFYSEYPDCCMDIEPISEEKIETERALISQCRKPVLSISYRPAYDQGGPVEIL

Parental  PFLYLGSAYHASKCEFLANLHITALLNVSRRTSEACMSHLHYKWIP-VEDSHTADISSHFQEAIDFIDCV
          PFLYL.S.Y.ASKCEFLANLHITALLNVS..TSEAC.S.LHYKWIP..EDSH.ADISSHFQEAIDFIDCV
Retrocopy PFLYLRSGYYASKCEFLANLHITALLNVSWGTSEACKSPLHYKWIP<LEDSHRADISSHFQEAIDFIDCV

Parental  REKGGKVLVHCEAGISRSPTICMAYLMKTRQFRLKDAFDYIKQRRSVVSPNFGFMGQLLQYESEILPSTP
          RE.GGKVLVHCEAGIS.S.TICMAYLMKTRQF.LKDAFDYIKQ.RS.VSPNFGFMGQLLQYESEILPSTP
Retrocopy RETGGKVLVHCEAGISCSATICMAYLMKTRQFHLKDAFDYIKQSRSAVSPNFGFMGQLLQYESEILPSTP

Parental  TPQVPSCQGEAASSSFRAHLQTLSPDVQGSYYTFPTSVLAPVPTHSTVSELSRNAMATATS
          TPQ.PSCQGEAASSSF.AHLQTLSPDVQGSYYTFPT.VLAPVPTH..VSELSR..MA.ATS
Retrocopy TPQAPSCQGEAASSSFTAHLQTLSPDVQGSYYTFPTTVLAPVPTHRRVSELSRSSMAKATS

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Myotis lucifugus was not studied using RNA-Seq expression data.

ChIP-Seq

Myotis lucifugus was not studied using ChIP-Seq data.

EST

Myotis lucifugus was not studied using EST data.

TSS

Myotis lucifugus was not studied using FANTOM5 data.

Lab

retro_mluc_1121 was not experimentally validated.

Homology

Retrocopy orthology:

Myotis lucifugus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 3 parental genes, and 4 retrocopies.

Species	Parental gene accession	Retrocopies number
Dasypus novemcinctus	ENSDNOG00000001858	1 retrocopy	retro_dnov_1665,
Myotis lucifugus	ENSMLUG00000013773	1 retrocopy	retro_mluc_1121 ,
Pteropus vampyrus	ENSPVAG00000016242	2 retrocopies	retro_pvam_1416, retro_pvam_480,