>retro_pvam_480
GTACCCCGCCTGCCCGCGTTCGGCCTCCTCTAACCGGGATGTGAGGCTTTCTACTCAGAATCTCCTGACCGTCGTTTGGC
TCTAAAACCCATTTCTCAAGAGAAGATTGAAACCCAGAGGGCCCGCAGAAGCCAAGGTGGGGAACCAGTGCCCAGCATTA
GCCAAGGCCGGCCTGGGACCAGAGGAGCCCAGCCCATACCCGTCCTTCGGGTCCTCTACCCCGGAAGTGCCTACCCTGCA
TCCAGATGCGAGGTCCTGCCCACCTGCGCAGCATGGCCCTGCTGAATGTCTCACGGTGGACCTCCGAGGCCTGCACGACC
CACCTGCACTACAGATGGATCCCAAGAGAAGGAACCATATGCCTGACATTAGCTCCCACTTTCAAGAAACAATAGACTTA
ATCGACTGAGTCAGGGAGAGGGAGGGAAAGTCCTGGTCCAATGCGAGGTAGGGATCTCCCTGTTCACCTGGCACCTGTAT
GGCTTCCCTCAGGAAGAGAATCGCTTCCACCTGAGGGAGGCCTTCCATGACATCAAGCAGAAGAGTGTGATCTTACCCAG
CTGTGGCTTCATGAGCCCGCTCCTACAGTATAAATTTGAGATCCTGCCTTCCATGTCCATTCCCCAGGCTCCTTCCTGCC
AGCAGGAGGCAGCCAGCTCTTTACTTATATAGCCCATTTTCAGACACTGAGCCCTAATGCAGAGGGTTCTACTGTACATT
CCCTACTTCGGTGCTGTCACCAGTGCCCACCCACTCACGGGTCTCAGATTTCAGTGGGAGCTCCATAGTCACAGCGACAT
CCTGC
ORF - retro_pvam_480 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: |
58.99 % |
Parental protein coverage: |
70.05 % |
Number of stop codons detected: |
2 |
Number of frameshifts detected |
7 |
Retrocopy - Parental Gene Alignment:
Parental | LPAGPRVYFLKGGYETFYSEYPECCVDVKPISQERIDTDRALISQYGKPVLSVSY-RPAYDQGGPVEILP |
| .P..P....L..G.E.FYSE.P......KPISQE.I.T.RA..SQ.G.PV.S.S..RP......P...L. |
Retrocopy | VPRLPAFGLL*PGCEAFYSESPDRRLALKPISQEKIETQRARRSQGGEPVPSISQGRPGTRGAQPIPVLR |
|
Parental | FLYLGSAYHASKCEFL-ANLHITALLNVSRRTSEACTSHLHYKWIPVEDS-HTADISSHFQEAIDFIDCV |
| .LY.GSAY.AS.CE.L.A.L...ALLNVSR.TSEACT.HLHY.WIP.E...H..DISSHFQE.ID.ID.V |
Retrocopy | VLYPGSAYPASRCEVL<AHLRSMALLNVSRWTSEACTTHLHYRWIPREGT<HMPDISSHFQETIDLID*V |
|
Parental | REK-GGKVLVHCEAGISR-SPTICMAYLMKT-RQFRLKDAFDYIKQRRSVVSPNFGFMGQLLQYESEILP |
| RE..GGKVLV.CE.GIS..SP..CMA.L.K....F.L..AF..IKQ..SV..P..GFM..LLQY..EILP |
Retrocopy | RER<GGKVLVQCEVGISL>SPGTCMASLRKR<NRFHLREAFHDIKQK-SVILPSCGFMSPLLQYKFEILP |
|
Parental | STPTPQAPSC-QGEAASS-SFIAHLQTLSPDVQGS-YCTFPTSVLAPVPTHSTVSELSRSPVATATSC |
| S...PQAPSC.Q..A.S....IAH.QTLSP...GS.YCTFPTSVL.PVPTHS.VS..S.S...TATSC |
Retrocopy | SMSIPQAPSCQQEAASSL<TYIAHFQTLSPNAEGS<YCTFPTSVLSPVPTHSRVSDFSGSSIVTATSC |
|
Legend:
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Pteropus vampyrus was not studied using RNA-Seq expression data.
Pteropus vampyrus was not studied using ChIP-Seq data.
Pteropus vampyrus was not studied using EST data.
Pteropus vampyrus was not studied using FANTOM5 data.
retro_pvam_480 was not experimentally validated.
Retrocopy orthology:
Pteropus vampyrus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to
help section.
Parental genes homology:
Parental genes homology involve
3 parental genes, and
4 retrocopies.