RetrogeneDB ID:

retro_pvam_480

Retrocopy
location
Organism:Megabat (Pteropus vampyrus)
Coordinates:GeneScaffold_3405:155257..156062(+)
Located in intron of:None
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:DUSP5
Ensembl ID:ENSPVAG00000016242
Aliases:None
Description:dual specificity phosphatase 5 [Source:HGNC Symbol;Acc:3071]


Retrocopy-Parental alignment summary:






>retro_pvam_480
GTACCCCGCCTGCCCGCGTTCGGCCTCCTCTAACCGGGATGTGAGGCTTTCTACTCAGAATCTCCTGACCGTCGTTTGGC
TCTAAAACCCATTTCTCAAGAGAAGATTGAAACCCAGAGGGCCCGCAGAAGCCAAGGTGGGGAACCAGTGCCCAGCATTA
GCCAAGGCCGGCCTGGGACCAGAGGAGCCCAGCCCATACCCGTCCTTCGGGTCCTCTACCCCGGAAGTGCCTACCCTGCA
TCCAGATGCGAGGTCCTGCCCACCTGCGCAGCATGGCCCTGCTGAATGTCTCACGGTGGACCTCCGAGGCCTGCACGACC
CACCTGCACTACAGATGGATCCCAAGAGAAGGAACCATATGCCTGACATTAGCTCCCACTTTCAAGAAACAATAGACTTA
ATCGACTGAGTCAGGGAGAGGGAGGGAAAGTCCTGGTCCAATGCGAGGTAGGGATCTCCCTGTTCACCTGGCACCTGTAT
GGCTTCCCTCAGGAAGAGAATCGCTTCCACCTGAGGGAGGCCTTCCATGACATCAAGCAGAAGAGTGTGATCTTACCCAG
CTGTGGCTTCATGAGCCCGCTCCTACAGTATAAATTTGAGATCCTGCCTTCCATGTCCATTCCCCAGGCTCCTTCCTGCC
AGCAGGAGGCAGCCAGCTCTTTACTTATATAGCCCATTTTCAGACACTGAGCCCTAATGCAGAGGGTTCTACTGTACATT
CCCTACTTCGGTGCTGTCACCAGTGCCCACCCACTCACGGGTCTCAGATTTCAGTGGGAGCTCCATAGTCACAGCGACAT
CCTGC

ORF - retro_pvam_480 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 58.99 %
Parental protein coverage: 70.05 %
Number of stop codons detected: 2
Number of frameshifts detected 7


Retrocopy - Parental Gene Alignment:

ParentalLPAGPRVYFLKGGYETFYSEYPECCVDVKPISQERIDTDRALISQYGKPVLSVSY-RPAYDQGGPVEILP
.P..P....L..G.E.FYSE.P......KPISQE.I.T.RA..SQ.G.PV.S.S..RP......P...L.
RetrocopyVPRLPAFGLL*PGCEAFYSESPDRRLALKPISQEKIETQRARRSQGGEPVPSISQGRPGTRGAQPIPVLR
ParentalFLYLGSAYHASKCEFL-ANLHITALLNVSRRTSEACTSHLHYKWIPVEDS-HTADISSHFQEAIDFIDCV
.LY.GSAY.AS.CE.L.A.L...ALLNVSR.TSEACT.HLHY.WIP.E...H..DISSHFQE.ID.ID.V
RetrocopyVLYPGSAYPASRCEVL<AHLRSMALLNVSRWTSEACTTHLHYRWIPREGT<HMPDISSHFQETIDLID*V
ParentalREK-GGKVLVHCEAGISR-SPTICMAYLMKT-RQFRLKDAFDYIKQRRSVVSPNFGFMGQLLQYESEILP
RE..GGKVLV.CE.GIS..SP..CMA.L.K....F.L..AF..IKQ..SV..P..GFM..LLQY..EILP
RetrocopyRER<GGKVLVQCEVGISL>SPGTCMASLRKR<NRFHLREAFHDIKQK-SVILPSCGFMSPLLQYKFEILP
ParentalSTPTPQAPSC-QGEAASS-SFIAHLQTLSPDVQGS-YCTFPTSVLAPVPTHSTVSELSRSPVATATSC
S...PQAPSC.Q..A.S....IAH.QTLSP...GS.YCTFPTSVL.PVPTHS.VS..S.S...TATSC
RetrocopySMSIPQAPSCQQEAASSL<TYIAHFQTLSPNAEGS<YCTFPTSVLSPVPTHSRVSDFSGSSIVTATSC

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






Pteropus vampyrus was not studied using RNA-Seq expression data.
Pteropus vampyrus was not studied using ChIP-Seq data.
Pteropus vampyrus was not studied using EST data.
Pteropus vampyrus was not studied using FANTOM5 data.
retro_pvam_480 was not experimentally validated.

Retrocopy orthology:
Pteropus vampyrus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

Parental genes homology:
Parental genes homology involve 3 parental genes, and 4 retrocopies.

Species Parental gene accession Retrocopies number
Dasypus novemcinctus ENSDNOG000000018581 retrocopy
Myotis lucifugus ENSMLUG000000137731 retrocopy
Pteropus vampyrus ENSPVAG00000016242 2 retrocopies
retro_pvam_1416, retro_pvam_480 ,



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