RetrogeneDB ID: retro_mluc_1156

Retrocopy location

• Organism: Microbat (Myotis lucifugus)
• Coordinates: GL429800:1588873..1589396(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: ENSMLUG00000010570
• Aliases: None
• Status: KNOWN_PSEUDOGENE

Parental gene information

• Parental gene symbol: TMEM199
• Ensembl ID: ENSMLUG00000012307
• Aliases: None
• Description: None

Sequence

>retro_mluc_1156
GAGCTTGAGGCCGAGTTGGAGAAGCACAAGGGTGGTGACCGCCCAGTGGTCCCGCAGGCCTGGCTTCCTCCCGCCTGATC
TGGGATCTGCACCACTACCCGCGAGAAAGGGATGCCACACTGTACCTCCATGAGCTCCTAGAAGGCAGTGAAATCTACCT
CCCAGAGGTGGGGAGGCCTCCTAGGAACCCAGAGCTCGCTGCCCGCCTGGAGGAAATGAAGATACAGCTGGCCAATGACG
AACATAAGCAGATCACCGCAATATCACCTGTCAGGACTCAAGGCATGGTGGGATTCTGAGTGACCTGGACAAGGAGGTGA
GGTCAGTGAAGGCCCTGGTCATCACCATCTTCTACTTCATTGTCACGGTGGCAGCTGCCTTTGTCTGCACTTACCTGGGA
AGCCAGTCTATCTTCCCAGAAATGGCCTCGCGGAAACTGGCTGCGGTGATGGTCGCCTCTGTGGTGGGTCTGGCCGAGCT
GGATGTCATGGTGCGGGTGATGGAAGGCGAGTTGGGAGAGATA

Alignment

ORF - retro_mluc_1156 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 80.9 %
• Parental protein coverage: 84.62 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 2

Retrocopy - Parental Gene Alignment:

Parental  ELEAAVEKKHKGGDRP-RGPARLVPFRLVRDLHQHLRERDSTLYLHELLEGSEIYLPEVVKPPRNPELVA
          ELEA..EK.HKGGDRP..GPA.L...RL..DLH...RERD.TLYLHELLEGSEIYLPEV..PPRNPEL.A
Retrocopy ELEAELEK-HKGGDRP<SGPAGLASSRLIWDLHHYPRERDATLYLHELLEGSEIYLPEVGRPPRNPELAA

Parental  RLEKIKIQLANDEYKRIT-RNVTCQDSRHGGILSDLGKEVRSVKAVVITIFNFIVTVAAAFVCTYLGSQY
          RLE..KIQLANDE.K.IT.RN.TCQDSRHGGILSDL.KEVRSVKA.VITIF.FIVTVAAAFVCTYLGSQ.
Retrocopy RLEEMKIQLANDEHKQIT<RNITCQDSRHGGILSDLDKEVRSVKALVITIFYFIVTVAAAFVCTYLGSQS

Parental  IFTEMALRILAAVIVASVVGLAELYVMVRVMEGELGEL
          IF.EMA.R.LAAV.VASVVGLAEL.VMVRVMEGELGE.
Retrocopy IFPEMASRKLAAVMVASVVGLAELDVMVRVMEGELGEI

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Myotis lucifugus was not studied using RNA-Seq expression data.

ChIP-Seq

Myotis lucifugus was not studied using ChIP-Seq data.

EST

Myotis lucifugus was not studied using EST data.

TSS

Myotis lucifugus was not studied using FANTOM5 data.

Lab

retro_mluc_1156 was not experimentally validated.

Homology

Retrocopy orthology:

Myotis lucifugus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 4 parental genes, and 4 retrocopies.

Species	Parental gene accession	Retrocopies number
Myotis lucifugus	ENSMLUG00000012307	1 retrocopy	retro_mluc_1156 ,
Monodelphis domestica	ENSMODG00000019239	1 retrocopy	retro_mdom_1457,
Otolemur garnettii	ENSOGAG00000003338	1 retrocopy	retro_ogar_801,
Tarsius syrichta	ENSTSYG00000014137	1 retrocopy	retro_tsyr_845,