RetrogeneDB ID: retro_mluc_1180

Retrocopy location

• Organism: Microbat (Myotis lucifugus)
• Coordinates: GL429804:6430869..6432380(+)
• Located in intron of: ENSMLUG00000009199

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: None
• Ensembl ID: ENSMLUG00000012513
• Aliases: None
• Description: None

Sequence

>retro_mluc_1180
AATGAAAACTGCCCCAAGGTGATAAGCTGTGAGTTTGCACACAATAGCAATTAGTATATCACTTTCCAGTCAGACACAGA
TGCACAACAGGCTTTTAAATATTTGAGAGAAGTTAAAACATTTCAGGGCAAGCCAATTATGGCAAGGATAAAAGCCATCA
ATACGTTTTTTGCTAAGAATGGTTTTTGATTAATGGATTCTAGTAGGTATAGTCAGCCCATTCAAACTCAAGCACAGTAT
GCCCACCAGTCTTTATGCAGCCTGTATATAGTCCTCACCAACAGTACTCCATCTATAGTATTGTGCCTCAGTCTTGGTCT
CCAAATCCTGCACCTTACTTTGAAACACCACTGGCTCCGTTTCCAAATAGTAGTTTTGTGAATGGTTTTAATTCACCAGG
ATCTTATAAAACAACTGCTGCTGCTGTGAATATGGGTCGACCATTCCAAGAAAATCGCGTGAAGCCTCATTTTAGGGCAT
CAAGTGGTTCAGAACACTCAACAGAGGGATCTGTGTCATTGGGGGATGGACCAGTAAACAGATCTGGTTCAAGGAACTTT
CCAACTGAACGACATAACCCTATAGTAACAGGACATCAGGAGCAAAGCTACCTTCCAGAAGAGACTCCAGCTTTGCTGAT
TGAACAGAATGGGGATTATGGTAGGGGCAGGAGAACTCTTTTCAGAGGTCGAAGATGACGAGAAGATGACAGAATCCCAA
GACCCCAACCTTCAACAGCTGAAGCAAAGGCTCCAACACCAAAGTTTGACTTATTAGCCTCAAATTTTCCTCCTTTACCT
GGAAGTTCATCAAGAACACCAGGTGAACTTGTTTTGGAGAGTAGGATGCCTGATGTTGTTAAAGGTGTCTACAAAGAAAA
GGATAATGAAGAGTTAAGACAAGGGGGTAGTTGCCCAGTGCCTGCAGAGGATGAACAGACCGACTGCACTGCTGCCCAGC
AACTCAATACAAGTACCGGTCCTTTGTGTACAGCTGAACCTCCTGCATTGAGCACAACTCATATAGAAAAGGATCTAGTG
GAGGATTCCACTGTTCAGAAGGATGTTCTCAACTCGACAACTATATCAGTTTCTTCCCAAAATCCTGCAAAGCCATCAGG
GACAAATACTGCTTCACCATGTGATAATAACATAAATGCAGCTGTAACTGTGGCCCTACAGGAACCCTGAAAGCTAAGTT
ATGCTGAAGTGTGCCAGAAGCCCCCTAAAGAGCCATCTCCAATTCCTGTGCAGCCGCTACGAGAACTTCGCTCCAATGTA
GTGTCTCCCACCAAAAATGAAGAGAATGGAGCTCCTGAGAAGTCCATTGAGAAACCACATGAGAAGCCAGAAGCAAGGGC
TAGTAAGGATTATTCTGGCTTCCGAGGCAATACCATTTCCAGGGGAGCAGCTGGAAAAATCAGGGAACTGAGACGCCAGT
TTGGTCACAGGGCCATACCTCAGGGAGTTACTCGACGTAATGGCAAAGAGCAATATGTGCCACCCAGATCA

Alignment

ORF - retro_mluc_1180 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 94.66 %
• Parental protein coverage: 69.52 %
• Number of stop codons detected: 4
• Number of frameshifts detected: 1

Retrocopy - Parental Gene Alignment:

Parental  NENCPKVISCEFAHNSNWYITFQSDTDAQQAFKYLREEVKTFQGKPIMARIKAINTFFAKNGFRLMDSSM
          NENCPKVISCEFAHNSN.YITFQSDTDAQQAFKYLRE.VKTFQGKPIMARIKAINTFFAKNGF.LMDSS.
Retrocopy NENCPKVISCEFAHNSN*YITFQSDTDAQQAFKYLRE-VKTFQGKPIMARIKAINTFFAKNGF*LMDSSR

Parental  YSQPIQTQAQYAS-PVFMQPVYSPHQQYSIYSIVPQSWSPNPAPYFETPLAPFPNS-FVNGFSSPGSYKT
          YSQPIQTQAQYA..PVFMQPVYSPHQQYSIYSIVPQSWSPNPAPYFETPLAPFPNS.FVNGF.SPGSYKT
Retrocopy YSQPIQTQAQYAH<PVFMQPVYSPHQQYSIYSIVPQSWSPNPAPYFETPLAPFPNSSFVNGFNSPGSYKT

Parental  TAAAVNMGRPFQKNRVKPHFRASSGSEHSTEGSVSLGDGPVNRSGSRNFPTERHNPIVTGHQEQSYLPKE
          TAAAVNMGRPFQ.NRVKPHFRASSGSEHSTEGSVSLGDGPVNRSGSRNFPTERHNPIVTGHQEQSYLP.E
Retrocopy TAAAVNMGRPFQENRVKPHFRASSGSEHSTEGSVSLGDGPVNRSGSRNFPTERHNPIVTGHQEQSYLPEE

Parental  TPTLPIEQNGDYGRGRRTLFRGRRRREDDRIPRSQPSTPEAKAPTPKFDLLASNFPPLPGSSSRTPGELV
          TP.L.IEQNGDYGRGRRTLFRGRR.REDDRIPR.QPST.EAKAPTPKFDLLASNFPPLPGSSSRTPGELV
Retrocopy TPALLIEQNGDYGRGRRTLFRGRR*REDDRIPRPQPSTAEAKAPTPKFDLLASNFPPLPGSSSRTPGELV

Parental  LESRMSDVVKGVCKEKDNEELRQGDSCPVPAEDEQTDCTAAQQLNTSTGPSCTAETLALSTTHIEKDIVE
          LESRM.DVVKGV.KEKDNEELRQG.SCPVPAEDEQTDCTAAQQLNTSTGP.CTAE..ALSTTHIEKD.VE
Retrocopy LESRMPDVVKGVYKEKDNEELRQGGSCPVPAEDEQTDCTAAQQLNTSTGPLCTAEPPALSTTHIEKDLVE

Parental  DSTVQKDVLNSTTISVSSPNPAKPSGTNTASPCDNNVNAAVTVALQEPRKLSYAEVCQKPPKEPSPIPVQ
          DSTVQKDVLNSTTISVSS.NPAKPSGTNTASPCDNN.NAAVTVALQEP.KLSYAEVCQKPPKEPSPIPVQ
Retrocopy DSTVQKDVLNSTTISVSSQNPAKPSGTNTASPCDNNINAAVTVALQEP*KLSYAEVCQKPPKEPSPIPVQ

Parental  PLRELRSNVVSPTKNEENGAPEKSIEKPHEKPEARASKDYSGFRGNTIPRGAAGKIREQRRQFGHRAIPQ
          PLRELRSNVVSPTKNEENGAPEKSIEKPHEKPEARASKDYSGFRGNTI.RGAAGKIRE.RRQFGHRAIPQ
Retrocopy PLRELRSNVVSPTKNEENGAPEKSIEKPHEKPEARASKDYSGFRGNTISRGAAGKIRELRRQFGHRAIPQ

Parental  GVTRRNGKEQYVPPRS
          GVTRRNGKEQYVPPRS
Retrocopy GVTRRNGKEQYVPPRS

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Myotis lucifugus was not studied using RNA-Seq expression data.

ChIP-Seq

Myotis lucifugus was not studied using ChIP-Seq data.

EST

Myotis lucifugus was not studied using EST data.

TSS

Myotis lucifugus was not studied using FANTOM5 data.

Lab

retro_mluc_1180 was not experimentally validated.

Homology

Retrocopy orthology:

Myotis lucifugus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 7 parental genes, and 7 retrocopies.

Species	Parental gene accession	Retrocopies number
Homo sapiens	ENSG00000161813	1 retrocopy	retro_hsap_1483,
Myotis lucifugus	ENSMLUG00000012513	1 retrocopy	retro_mluc_1180 ,
Macaca mulatta	ENSMMUG00000008172	1 retrocopy	retro_mmul_2129,
Mus musculus	ENSMUSG00000023025	1 retrocopy	retro_mmus_3568,
Nomascus leucogenys	ENSNLEG00000017798	1 retrocopy	retro_nleu_2388,
Pan troglodytes	ENSPTRG00000004935	1 retrocopy	retro_ptro_1003,
Rattus norvegicus	ENSRNOG00000049091	1 retrocopy	retro_rnor_644,