RetrogeneDB ID: | retro_mluc_1231 | ||
Retrocopylocation | Organism: | Microbat (Myotis lucifugus) | |
Coordinates: | GL429808:5512728..5513516(+) | ||
Located in intron of: | ENSMLUG00000013261 | ||
Retrocopyinformation | Ensembl ID: | ENSMLUG00000026133 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | SUCLG1 | ||
Ensembl ID: | ENSMLUG00000012370 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 94.34 % |
Parental protein coverage: | 76.52 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 1 |
Parental | VGGTTPGKGGKTHLGLPVFNTVKEAKAQTGATASVIYVPPPFAAAAIDEAVEA-EMPLVVCITEGIPQQD |
VGGTTPGKGGK.HLGLPVFNTVKEAKAQTGAT.SVIYVPPPF.AA.IDEAVEA.EMPLVVCITEGIPQQD | |
Retrocopy | VGGTTPGKGGKAHLGLPVFNTVKEAKAQTGATVSVIYVPPPFVAA-IDEAVEA<EMPLVVCITEGIPQQD |
Parental | MVRVKHKILRQGKTRLIGPNCPGVINPGECKIGIMPGHIHKKGRIGIVSRSGTLTYEAVHQTTQVGLGQT |
MVRVKHKILRQGKTRL.GPNCPGVINPGECKIGIMPGHIHKKGRIGI.SRSGTLTYEAVHQTTQVGLGQ. | |
Retrocopy | MVRVKHKILRQGKTRLTGPNCPGVINPGECKIGIMPGHIHKKGRIGILSRSGTLTYEAVHQTTQVGLGQS |
Parental | LCIGIGGDPFNGTDFIDCLEVFLNDPATEGIILIGEIGGNAEENAAEYLKQHNSGPKAKPVVSFIAGLTA |
LCIGIGGDPFNGTDFIDCLEVFLNDPATEGIILIGEIGGNAEENAAE.LKQHNSGPKAKPV.SFIAGLTA | |
Retrocopy | LCIGIGGDPFNGTDFIDCLEVFLNDPATEGIILIGEIGGNAEENAAEFLKQHNSGPKAKPVMSFIAGLTA |
Parental | PPGRRMGHAGAIIAGGKGGAKEKISALQSAGVVVSMSPAQLGNTMYKEFEKRKML |
PPGRRMGH.GAIIAG.KGG.KEKISALQSAGVVVSM.PAQLGNT.YKEFEKRKML | |
Retrocopy | PPGRRMGHTGAIIAGRKGGSKEKISALQSAGVVVSMLPAQLGNTIYKEFEKRKML |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Cavia porcellus | ENSCPOG00000003017 | 1 retrocopy | |
Myotis lucifugus | ENSMLUG00000012370 | 1 retrocopy |
retro_mluc_1231 ,
|
Procavia capensis | ENSPCAG00000013405 | 1 retrocopy | |
Pteropus vampyrus | ENSPVAG00000003656 | 2 retrocopies | |
Drosophila melanogaster | FBgn0004888 | 1 retrocopy |