RetrogeneDB ID: retro_mluc_1353

Retrocopy location

• Organism: Microbat (Myotis lucifugus)
• Coordinates: GL429826:4754570..4756816(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: ENSMLUG00000025022
• Aliases: None
• Status: KNOWN_PSEUDOGENE

Parental gene information

• Parental gene symbol: None
• Ensembl ID: ENSMLUG00000015486
• Aliases: None
• Description: None

Sequence

>retro_mluc_1353
ATCTGTGGTGACTGGGAGAAGCCGAAGCCCGTGCCCATCCTGCTGGGCAGTTTGCTGAAGAGAAAACTGCTGCCCAAGGC
CACGCTGCTGGTCGCCACGCGCCCAGAGGCCCTGGGGGAGCTGCGGCTCCTGGTGGTCCAGCCGCTGTTCATCGAGGTGG
AGGGCTTCCTGGAGGCGGACCGCAGGGGCTACTTCCTGAAGCACTTTGAGCAACAGGACCAGGCCCTGCGCGCCTTCGAG
GGCATGAAGGGCAGCCCGGCGCTGTTCCACATGGGCACGGCACCCGCCGTGTGCTGGGTCGTGTGCACGTGTCTGAAGGG
GCACCTGGAGAAGGGAGAGGACCCGGCCCCCACCTGCCGGATCCCCACCTCGCTGTTCCTGCGCTTCCTGTGCGGCCAGT
GCTCCCCAGCTGCCCCCCGGCAGCAGCCCTGCCCCCACCTCCCCACTGTGCTCCAGGCTCTGAGCCTCTTGGCGGCCTGG
GGCGTCTGGGCGCAGACGTCCCTGTTCGATGGCGAAGACCTCGGGCAGCTGGGGGTCAGCGAGTCCAACCTGCGACCTTT
CCTGGACGGCAAGGTCCTGCAGGCGGACGTGGACTGCGAGGGCTGCTACGCCTTCCTACACCTCAGCGTCCAGCAGTTCC
TGGCCGCCCTCTTCTACCTGCTGGACGGCGCAGAGCGAGAGGACGCGGGCGGCTGGGCACCGGACATCGGGAACCTGCGC
GGGCTGCTGTCCAAGGAGGAGCGGCTGCACAACCCCAGCCTGACCCGCGTGGGCTACTTCCTGTTCGGCCTAGCCAACCA
GGAGAGGGCCCGGGAGCTGGAGGCCACCTTCGGCTGCCGCGTGTCCTTGGACGTCAGGCAGGAGCTGCTGAGAGTGACGC
CCAGCAGGGACTGGCCCTTCTCCTCCAGGGCGGACACCCGGGAGCTGATGCGCTGCCTCTATGAGTCTCAAGAGGAGGCG
CTGGTGAGGGAGGCCCTGGGGCCATCACGGAGCTGGCCCTGCACCTGCAGAGTGAGAGGGACCTCGTGCACGCGTCCTTC
TGCCTCAGGCACGGCCAGGCCCTGCGCAGGCTCTGGCTGCAGGTGGAGAAGGGGATCTTCCTGGAGAATGACGGGGCCTC
GGAGCCAGGCACGTGGGCGGAGCGTTCCCAGCAAGACCATCATGCTCTTTGTCGCTGGACGGAGCTCTGCTCTGTGCTGA
GCTCTAACGAGAACCTGACGTTTCTGGAAGTGAGTCAGAGCTTCCTGAGTCACTCCTCGGTGAGGATTCTGTGTGAGCAG
ATAACCCACGTCACCTGTAACGTCCAGAAGATGGTGATTAAAAACGTCTCCCGGGTCCACGCCTATCGGGACTTCTGTCT
GGCTTTGGTTGGTAAGAAGACCCTGACGCACCTGATCCTGGGAGGCAACGTCCCCTGTGACAACGTGCTGCTGCTGCTGC
TGTGTGAGGCCCTAAAGCACCGGAGGTGCAACTTGCAGTATCTCAGGTTGGGATCTTGTTCTGATATCACTCAGCATTTG
AACGACTTCTCCTTGGCCCTCAAAGTCAACCAGTCCCTGCAATCTCTGGACCTCACAGCCAGTGAGCTCGGGGATGAGGG
GGTCAAGTTGCTGTGTGGGAGTCTGAGGCACCCAAATTGTTTCCTACAGTGGTTGTCGTTGGAAAACTGTCACCTGACGG
AAGTCTGTTGCAAGGAGCTCGCCTCCACTTTGATTGTCAACCAGAGGCTGACACACCTGTGCTTGGCCAAGAACAACCTT
GGAGATGGTGGGGTGAGACTGCTGAGCGAGGGTTTGAGTTACCCGGAATGTCAGCTACAGACCCTGGTGTTGTGCCAGTG
CAGCATAACCAGACGCGGCTGCAAGCACATCTCCAACTTTCTCCAAGGAGACTCCTGCCTGACCCTCTCGGACCTGAGTC
TCAACCCCATAGCGACTGGGTTGTGGTTTCTCTGTGAGGCATTGAAGAAGCCGGGTTGCAACCTCAAATGCCTGGGGCTC
TGTGGCTGCTCCCTCCCGTCTTTCTGCTGGCAGGACCTGGCGTCTGCCCTGACCAGCAACCAGAGGCTGGAGGTCCTGGA
CCTGGGCCAGAACTCCTTGGGGCAGAGCGGGATCACCATGCTCTTCGAGGCCCTGAAGTAGAGATCCAGCCCTTTGAAGA
GGCTCCGGCTGAGGACCGAGGAGTCCAGCGCCCAGACCCAGAAGCTGCTGAAGGAAGTGAAGGACAGCAACCCCAAGCTG
AACATC

Alignment

ORF - retro_mluc_1353 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 76.03 %
• Parental protein coverage: 71.48 %
• Number of stop codons detected: 1
• Number of frameshifts detected: 1

Retrocopy - Parental Gene Alignment:

Parental  ICGNWEKPKPVSVLLGSLLMRKLLPKATLLVTTRPEALGELRLLVDQPLFIEVEGFLEADRRGYFLKHFE
          ICG.WEKPKPV..LLGSLL.RKLLPKATLLV.TRPEALGELRLLV.QPLFIEVEGFLEADRRGYFLKHFE
Retrocopy ICGDWEKPKPVPILLGSLLKRKLLPKATLLVATRPEALGELRLLVVQPLFIEVEGFLEADRRGYFLKHFE

Parental  QQDQALRAFEGMKGSPALFHMGAAPAVCWVVCTCLKGQLEKGEDPAPTCRTPTSLFLRFLCNQCSPVAPG
          QQDQALRAFEGMKGSPALFHMG.APAVCWVVCTCLKG.LEKGEDPAPTCR.PTSLFLRFLC.QCSP.AP.
Retrocopy QQDQALRAFEGMKGSPALFHMGTAPAVCWVVCTCLKGHLEKGEDPAPTCRIPTSLFLRFLCGQCSPAAPR

Parental  SGPAPHLPTALQALSLLAARGIWAQTSLFDCEDLGQLGVSESDLRPFLDGKVLQADADCEGCYDFLHLSV
          ..P.PHLPT.LQALSLLAA.G.WAQTSLFD.EDLGQLGVSES.LRPFLDGKVLQAD.DCEGCY.FLHLSV
Retrocopy QQPCPHLPTVLQALSLLAAWGVWAQTSLFDGEDLGQLGVSESNLRPFLDGKVLQADVDCEGCYAFLHLSV

Parental  QQFLAALFYLLDSAEPGDAGGWAPDIGNVRALLSKEERLRNPSLTRVGYFLFGLANQERARELEATFGCR
          QQFLAALFYLLD.AE..DAGGWAPDIGN.R.LLSKEERL.NPSLTRVGYFLFGLANQERARELEATFGCR
Retrocopy QQFLAALFYLLDGAEREDAGGWAPDIGNLRGLLSKEERLHNPSLTRVGYFLFGLANQERARELEATFGCR

Parental  VSLDVRQELLRVTRSRDWSFSSRADTRELMCCLYESQEEALVREALAP-ITELALHLQSERDLVHASFCL
          VSLDVRQELLRVT.SRDW.FSSRADTRELM.CLYESQEEALVREAL.P.ITELALHLQSERDLVHASFCL
Retrocopy VSLDVRQELLRVTPSRDWPFSSRADTRELMRCLYESQEEALVREALGP<ITELALHLQSERDLVHASFCL

Parental  RHGQALRRLWLQVEKGIFLENDGASEPGTWEERSQSDRHLLPFWADLCSVFGANKNLVFLDISRSFLSTS
          RHGQALRRLWLQVEKGIFLENDGASEPGTW.ERSQ.D.H.L..W..LCSV...N.NL.FL..S.SFLS.S
Retrocopy RHGQALRRLWLQVEKGIFLENDGASEPGTWAERSQQDHHALCRWTELCSVLSSNENLTFLEVSQSFLSHS

Parental  SVRLLCEKISSVPCSLQKVVLRNVSPADAYRNFCVILGGYETLTHLTLEGN--DQNNMLPILCGVLLHPK
          SVR.LCE.I..V.C..QK.V..NVS...AYR.FC..L.G..TLTHL.L.GN....N..L..LC..L.H..
Retrocopy SVRILCEQITHVTCNVQKMVIKNVSRVHAYRDFCLALVGKKTLTHLILGGNVPCDNVLLLLLCEALKHRR

Parental  CHLQYLRLVSCSATAQQWADLASSLETNHSLTCLNLTANEFQDEGARLLYMTLRHPKCILQRLSLENCHL
          C.LQYLRL.SCS...Q...D....L..N.SL..L.LTA.E..DEG..LL...LRHP.C.LQ.LSLENCHL
Retrocopy CNLQYLRLGSCSDITQHLNDFSLALKVNQSLQSLDLTASELGDEGVKLLCGSLRHPNCFLQWLSLENCHL

Parental  TAAYCKELTSTLMVNQRLTHLCLAKNDLGDHGVRLLCEGLSYPECRLQTLVLFHCSITSDGC-IILALLQ
          T...CKEL.STL.VNQRLTHLCLAKN.LGD.GVRLL.EGLSYPEC.LQTLVL..CSIT..GC..I...LQ
Retrocopy TEVCCKELASTLIVNQRLTHLCLAKNNLGDGGVRLLSEGLSYPECQLQTLVLCQCSITRRGCKHISNFLQ

Parental  ESSSLTHLDLGLNHIGTTGVKFLCEALKKPLCHLRCLWLWGCAITPFSCADLSSALSSNQHLITLDLGQN
          ..S.LT..DL.LN.I..TG..FLCEALKKP.C.L.CL.L.GC....F...DL.SAL.SNQ.L..LDLGQN
Retrocopy GDSCLTLSDLSLNPI-ATGLWFLCEALKKPGCNLKCLGLCGCSLPSFCWQDLASALTSNQRLEVLDLGQN

Parental  SLEYSGIKMLGDALKLQSCPLQKLRLKIDHSDAQIQKLLEEIKEGNPKLTI
          SL..SGI.ML..ALK..S.PL..LRL....S.AQ.QKLL.E.K..NPKL.I
Retrocopy SLGQSGITMLFEALK*RSSPLKRLRLRTEESSAQTQKLLKEVKDSNPKLNI

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Myotis lucifugus was not studied using RNA-Seq expression data.

ChIP-Seq

Myotis lucifugus was not studied using ChIP-Seq data.

EST

Myotis lucifugus was not studied using EST data.

TSS

Myotis lucifugus was not studied using FANTOM5 data.

Lab

retro_mluc_1353 was not experimentally validated.

Homology

Retrocopy orthology:

Myotis lucifugus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 4 parental genes, and 5 retrocopies.

Species	Parental gene accession	Retrocopies number
Callithrix jacchus	ENSCJAG00000017689	2 retrocopies	retro_cjac_1321, retro_cjac_3184,
Myotis lucifugus	ENSMLUG00000015486	1 retrocopy	retro_mluc_1353 ,
Macaca mulatta	ENSMMUG00000005266	1 retrocopy	retro_mmul_2584,
Pan troglodytes	ENSPTRG00000011480	1 retrocopy	retro_ptro_3224,