RetrogeneDB ID: retro_mluc_1434

Retrocopy location

• Organism: Microbat (Myotis lucifugus)
• Coordinates: GL429837:3238569..3240664(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: CRNKL1
• Ensembl ID: ENSMLUG00000016513
• Aliases: None
• Description: None

Sequence

>retro_mluc_1434
GGCGCCCGAGTTCACCGAACGAATTCTGCTGCAGCCATGGCAGCCTCCACCTCGGCCGGGAAGCAGAGAATTCCCAAAGT
GGCCAAGGTGAAAAACAAAGCCCCAGCTGAGGTACAGATCACTGCGGAACAGCTTTTAAGAGAAGCTAAAGAAAGAGAAC
TTGAGCTTCTTCCACCTCCACCTCAACAGAAGATCACAGATGAAGAAGAGTTCAATGATTACAAACTAAGGAAAAGGAAG
ACTTTTGAAGATAACATAAGAAAAAACAGGACTGTGATTAGTAACTGGATAAAATATGCACAATGGGAAGAGAGTCTAAA
GGAGATTCAAAGGGCTTGCTCCATATACGAACGTGCTTTAGATGTGGACTATCGAAATATTACACTCTGGCTGAAATATG
CGGAAATGGAAATGAAGAATCACCAGGTCAACCATGCCCGAAATATCTGGGACCGGGCCATAACAACTCTGCCCCGAGTC
AACCAGTTCTGGTACAAATACACATACATGGAGGAGATGCTGGGAAATGTGGCTGGTGCCCGGTAGGTGTTTGAGTGCTG
GATGGAATGGCAGCCAGAGGAGCAAGCCTGGCACTCCTACATCAACTTTGAGCTGCGATACAAAGAAGTGGATCGGGCCT
GCACCATTTATGAGAGATTTGTACTTGTGCACCCTGATGTTAAGAACTGGATCAAGTATGCCCGCTTTGAAGAAAAACAT
GGTTATTTTGCCCATGCACGGAAAGTGTACGAGAGGGCTGTGGAATTCTTTGGAGATGAACATATGGATGAATGCCTTTA
TGTTGCCTTTGCCAAATTTGAAGAAAATCAGAAAGAATTTGAAAGGGTACGAGTTATTTACAAATATGCCCTGGATAGAA
TTTAAAAACAAGAGGCCCAAGAGCTCTTTAAAAATTATACCATCTTTGAGAAGAAGTTTGGTGATAGGCGGGGTATTGAA
GACATCATTGTGAGCAAACGGAGATTCCAATATGAAGAAGAAGTGAAGGCTAATCCACACAATTATGATGCCTGGTTTGA
TTACCTGCGCTTGGTGGAAAGTGATGCAGAAGCAGAAACTGTACGAGAAGTCTATGAAAGAGCTATTGCCAATGTCCCAC
CCATTCAGGAGAAGAGACATTGGAAGCGTTACATCTATCTTTGGGTCAACTATGCAGTCTATGAAGAACTGGAGGCAAAG
GATCCTGAAAGGACAAGACAGGCGTATCAAGCCTCTTTGGAACTAATTCCTCATAAAAAGTTCACATTTGCCAAAATGTG
GCTACTATCTGCACAATTTGAAATAAGACAGAAAAATTTACCATTTGCCCGAAGAGGTTTGGGGACTTCCATAGGCAAAT
GTCCAAAGAACAAGTTATTTAAAGGTTACATAGAATTGGAGCTACAGCTTCGAGAATTTGACAGATGTCGGAAGCTTTAT
GAAAAGTTCCTGGAATTTGGACCTGAAAATTGTACCTCTTGGATTAAATTTGCAGAATTAGAAACAATCCTTGGCGATAT
TGAGAGAGCCCATGCAATCTACGAGTTAGCCATCAGCCAGCCACGCTTAGACATGGCAGAGGTGCTCTGGAAATCATATA
TTGATTTTGAAATTGAGCAGGAAGGAACTGAAAGAACGCGCAATCTTTACCGACGATTGCTTCAACGGACACAACATGTC
AAGGTATGGATCAGTTTTGCAGTTTGAGTTGTCTTCAGGGAAAGGAGGAAGTTTGCCGAAATGCAGACAGATTTATGAAG
AGGCTAACAAAACCATGTGAAACTGTGAGGAAAAGGAAGAGAGACTTATGTTGCTGGAATCTTGGAGAAACTTTGAAGAT
GATTTTGGAACTACGTCAGATAAAGAAAGAGTAGACAAACTCATGCCAAAGAAAGTCAAAAAGAGAAGAAAGGTCCAGGC
GGATGATGGGTCTGATGCAGGCTGGGAAGAATACTATGATTACATCTTTCCGGAAGATGCTGCCAACCAACCACATCTCA
AGCTCCTTGCCTTGGCCAAACTTTGGAAGAAACAGCAACAGGAAAAGGAGGCTGCCGAGCAAGACCCAGATAAGAACATT
GATGAGAGTGAGTCC

Alignment

ORF - retro_mluc_1434 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 94.73 %
• Parental protein coverage: 90.67 %
• Number of stop codons detected: 3
• Number of frameshifts detected: 2

Retrocopy - Parental Gene Alignment:

Parental  GLRVHGTNSAAAMAASTAAGKQRIPKVAKVKNKAPAEVQITAEQLLREAKERELELLPPPPQQKITDEEE
          G.RVH.TNSAAAMAAST.AGKQRIPKVAKVKNKAPAEVQITAEQLLREAKERELELLPPPPQQKITDEEE
Retrocopy GARVHRTNSAAAMAASTSAGKQRIPKVAKVKNKAPAEVQITAEQLLREAKERELELLPPPPQQKITDEEE

Parental  LNDYKLRKRKTFEDNIRKNRTVISNWIKYAQWEESLKEIQRARSIYERALDVDYRNITLWLKYAEMEMKN
          .NDYKLRKRKTFEDNIRKNRTVISNWIKYAQWEESLKEIQRA.SIYERALDVDYRNITLWLKYAEMEMKN
Retrocopy FNDYKLRKRKTFEDNIRKNRTVISNWIKYAQWEESLKEIQRACSIYERALDVDYRNITLWLKYAEMEMKN

Parental  RQVNHARNIWDRAITTLPRVNQFWYKYTYMEEMLGNVAGARQVFERWMEWQPEEQAWHSYINFELRYKEV
          .QVNHARNIWDRAITTLPRVNQFWYKYTYMEEMLGNVAGAR.VFE.WMEWQPEEQAWHSYINFELRYKEV
Retrocopy HQVNHARNIWDRAITTLPRVNQFWYKYTYMEEMLGNVAGAR*VFECWMEWQPEEQAWHSYINFELRYKEV

Parental  DRARTIYSSALVLVHPDVKNWIKYARFEEKHGYFAHARKVYERAVEFFGDEHMDERLYVAFAKFEENQKE
          DRA.TIY....VLVHPDVKNWIKYARFEEKHGYFAHARKVYERAVEFFGDEHMDE.LYVAFAKFEENQKE
Retrocopy DRACTIYER-FVLVHPDVKNWIKYARFEEKHGYFAHARKVYERAVEFFGDEHMDECLYVAFAKFEENQKE

Parental  FERVRVIYKYALDRISKQEAQELFKNYTIFEKKFGDRRGIEDIIVSKRRFQYEEEVKANPHNYDAWFDYL
          FERVRVIYKYALDRI.KQEAQELFKNYTIFEKKFGDRRGIEDIIVSKRRFQYEEEVKANPHNYDAWFDYL
Retrocopy FERVRVIYKYALDRI*KQEAQELFKNYTIFEKKFGDRRGIEDIIVSKRRFQYEEEVKANPHNYDAWFDYL

Parental  RLVESDAEAETVREVYERAIANVPPIQEKRHWKRYIYLWVNYALYEELEAKDPERTRQVYQASLELIPHK
          RLVESDAEAETVREVYERAIANVPPIQEKRHWKRYIYLWVNYA.YEELEAKDPERTRQ.YQASLELIPHK
Retrocopy RLVESDAEAETVREVYERAIANVPPIQEKRHWKRYIYLWVNYAVYEELEAKDPERTRQAYQASLELIPHK

Parental  KFTFAKMWLLYAQFEIRQKNLPFARRALGTSIGKCPKNKLFKGYIELELQLREFDRCRKLYEKFLEFGPE
          KFTFAKMWLL.AQFEIRQKNLPFARR.LGTSIGKCPKNKLFKGYIELELQLREFDRCRKLYEKFLEFGPE
Retrocopy KFTFAKMWLLSAQFEIRQKNLPFARRGLGTSIGKCPKNKLFKGYIELELQLREFDRCRKLYEKFLEFGPE

Parental  NCTSWIKFAELETILGDIERARAIYELAISQPRLDMPEVLWKSYIDFEIEQEETERTRNLYRRLLQRTQH
          NCTSWIKFAELETILGDIERA.AIYELAISQPRLDM.EVLWKSYIDFEIEQE.TERTRNLYRRLLQRTQH
Retrocopy NCTSWIKFAELETILGDIERAHAIYELAISQPRLDMAEVLWKSYIDFEIEQEGTERTRNLYRRLLQRTQH

Parental  VKVWISFA-QFELSSGKE-GSLPKCRQIYEEANKTMRNCEEKEERLMLLESWRSFEDEFGTTSDKERVDK
          VKVWISFA.......GKE.GSLPKCRQIYEEANKTM.NCEEKEERLMLLESWR.FED.FGTTSDKERVDK
Retrocopy VKVWISFA<SLSCLQGKE<GSLPKCRQIYEEANKTM*NCEEKEERLMLLESWRNFEDDFGTTSDKERVDK

Parental  LMPEKVKKRRKVQADDGSDAGWEEYYDYIFPEDAANQPNLKLLAMAKLWKKQQQEKEAAEQDPDKDIDES
          LMP.KVKKRRKVQADDGSDAGWEEYYDYIFPEDAANQP.LKLLA.AKLWKKQQQEKEAAEQDPDK.IDES
Retrocopy LMPKKVKKRRKVQADDGSDAGWEEYYDYIFPEDAANQPHLKLLALAKLWKKQQQEKEAAEQDPDKNIDES

Parental  ES
          ES
Retrocopy ES

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Myotis lucifugus was not studied using RNA-Seq expression data.

ChIP-Seq

Myotis lucifugus was not studied using ChIP-Seq data.

EST

Myotis lucifugus was not studied using EST data.

TSS

Myotis lucifugus was not studied using FANTOM5 data.

Lab

retro_mluc_1434 was not experimentally validated.

Homology

Retrocopy orthology:

Myotis lucifugus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 4 parental genes, and 4 retrocopies.

Species	Parental gene accession	Retrocopies number
Macropus eugenii	ENSMEUG00000012167	1 retrocopy	retro_meug_44,
Myotis lucifugus	ENSMLUG00000016513	1 retrocopy	retro_mluc_1434 ,
Mus musculus	ENSMUSG00000001767	1 retrocopy	retro_mmus_207,
Rattus norvegicus	ENSRNOG00000010587	1 retrocopy	retro_rnor_2345,