RetrogeneDB ID: retro_mluc_1697

Retrocopy location

• Organism: Microbat (Myotis lucifugus)
• Coordinates: GL429886:1667647..1668525(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: MAPK3
• Ensembl ID: ENSMLUG00000011284
• Aliases: None
• Description: None

Sequence

>retro_mluc_1697
CTGCAGGAAATCCAGATCTTGCTGCGTTTCTGCCATGAGAATGTAATTGGCATCTGAGACATTTTTCAGGCACCTACCCT
GGATGCCATGAGGGATGTCTACATTGTGCAGGGCCTAATAGAGACAGACCTGTACAGGTTGCTCAAAAGCCAGCAACTGA
GCAGCAACCATGTCTGCTACTTCTACCAGATCCTGCGGGGCCTCAAGTATAGCCACTCAGCCACCGTGCTCCACCGGGAT
TTAAAGCCCTCCAACCTGCTCATCAACACCACCTGCGACCCTAAGATCTGAGATTTTGGCCTGGCACGGATTGTCGATCC
TGAGCATCACCACACTGGCTTCCTGACAGAATACATGGCCACAGGCTGGTACAGGGCCCCAGAGATCATGCTTAATTCCA
AGGGCTACACCAAGTCCATTGACATCTGGTCCGAGGGCTGCCTTCTGGCTGAAATGCTCTCCAACCAGCCCATCTTCCCT
GGCAAGCACTACCGGAACCAGCTCCATCACATTCTGGGTACCCTGGGCTCCCCATACCCAGAGGACCTGAATTGTATCAT
CAACATGAAATCCCAAAACTACCTACAGCCTTTGCCTTCCAAGACCAAGGTGGCCTGGGCCAAGCTATTCCCCAAGTCAG
ACTTCAAAGCCCTTGACCTGCTGGACCGGATGTTGACCTTTAACCCTAATAAACAGATCACATTGGAAGAAGCCCTGGCT
CACCCCTACCTGGAGCAGTACTACCACCCAACAGATGAGCCAGTGGCCAGGAACCTTTCACCTTTGACATGGAGCTGGAT
GATCTACCCAAGGAGTGGCTGAAGGAGCTCATATTCCAGGAGATAGCCTGCTTCCAGCCTGGGATGCTGGAGGCCACC

Alignment

ORF - retro_mluc_1697 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 85.42 %
• Parental protein coverage: 79.46 %
• Number of stop codons detected: 2
• Number of frameshifts detected: 1

Retrocopy - Parental Gene Alignment:

Parental  LREIQILLRFRHENVISIRDILRAPTLDAMRDVYIVQDLMETDLYKLLKSQQLSNDHVCYFLYQILRGLK
          L.EIQILLRF.HENVI.I.DI..APTLDAMRDVYIVQ.L.ETDLY.LLKSQQLS..HVCYF.YQILRGLK
Retrocopy LQEIQILLRFCHENVIGI*DIFQAPTLDAMRDVYIVQGLIETDLYRLLKSQQLSSNHVCYF-YQILRGLK

Parental  YIHSANVLHRDLKPSNLLINTTCDLKICDFGLARIADPEHDHTGFLTEYVATRWYRAPEIMLNSKGYTKS
          Y.HSA.VLHRDLKPSNLLINTTCD.KI.DFGLARI.DPEH.HTGFLTEY.AT.WYRAPEIMLNSKGYTKS
Retrocopy YSHSATVLHRDLKPSNLLINTTCDPKI*DFGLARIVDPEHHHTGFLTEYMATGWYRAPEIMLNSKGYTKS

Parental  IDIWSVGCILAEMLSNRPIFPGKHYLDQLNHILGILGSPSQEDLNCIINMKARNYLQSLPPKTKVAWAKL
          IDIWS.GC.LAEMLSN.PIFPGKHY..QL.HILG.LGSP..EDLNCIINMK..NYLQ.LP.KTKVAWAKL
Retrocopy IDIWSEGCLLAEMLSNQPIFPGKHYRNQLHHILGTLGSPYPEDLNCIINMKSQNYLQPLPSKTKVAWAKL

Parental  FPKSDSKALDLLDRMLTFNPNKRITVEEALAHPYLEQYYDPTDEPVA-EEPFTFDMELDDLPKERLKELI
          FPKSD.KALDLLDRMLTFNPNK.IT.EEALAHPYLEQYY.PTDEPVA..EPFTFDMELDDLPKE.LKELI
Retrocopy FPKSDFKALDLLDRMLTFNPNKQITLEEALAHPYLEQYYHPTDEPVA<QEPFTFDMELDDLPKEWLKELI

Parental  FQETARFQPGVLEAT
          FQE.A.FQPG.LEAT
Retrocopy FQEIACFQPGMLEAT

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Myotis lucifugus was not studied using RNA-Seq expression data.

ChIP-Seq

Myotis lucifugus was not studied using ChIP-Seq data.

EST

Myotis lucifugus was not studied using EST data.

TSS

Myotis lucifugus was not studied using FANTOM5 data.

Lab

retro_mluc_1697 was not experimentally validated.

Homology

Retrocopy orthology:

Myotis lucifugus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 7 parental genes, and 7 retrocopies.

Species	Parental gene accession	Retrocopies number
Canis familiaris	ENSCAFG00000017108	1 retrocopy	retro_cfam_1254,
Dasypus novemcinctus	ENSDNOG00000002191	1 retrocopy	retro_dnov_1241,
Loxodonta africana	ENSLAFG00000017904	1 retrocopy	retro_lafr_1022,
Myotis lucifugus	ENSMLUG00000005952	1 retrocopy	retro_mluc_302,
Myotis lucifugus	ENSMLUG00000011284	1 retrocopy	retro_mluc_1697 ,
Pongo abelii	ENSPPYG00000007239	1 retrocopy	retro_pabe_1440,
Rattus norvegicus	ENSRNOG00000019601	1 retrocopy	retro_rnor_831,