RetrogeneDB ID: retro_mluc_171

Retrocopy location

• Organism: Microbat (Myotis lucifugus)
• Coordinates: AAPE02062495:17170..19249(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: ENSMLUG00000022756
• Aliases: None
• Status: KNOWN_PROTEIN_CODING

Parental gene information

• Parental gene symbol: None
• Ensembl ID: ENSMLUG00000007379
• Aliases: None
• Description: None

Sequence

>retro_mluc_171
ATGCCATCAGAGAGTCGCTGCTGGGAGTCTCTGCAGGCGCTGCGCAGCTCCGACAAAGGTCGCCTCTGCTACCACCGCGA
CCGGCTCCTGCGGGGCGAGGATGTTCCTGAAGAATGTGTGTCCACTCCCCAGCTATCTTCTTATGCTGGATGGGTGGTAG
ATCATGTCCTACCCCACGCACAAGAGACCCTGTCTCTCTCCGAGACTCCAACATCCTCTAGATCCGCTTCAGGCCTGGAC
CAACCTTCATTTGTTCCCAAGTCTCCCATAAGAAGCCTTGCCTTCTCACCAGCATCCCCAAGAGCACCAGCAACACCAGG
TGGGACCAAGGGCAAATGTGAGTCCCAGCCCACGGAGCCCATGTTACTGCAGTCCTCCAGGGGCATCAAGATGGAAGGCT
GCATCCGAACGTATGAGCTAGTGCACAGAATGAAAGGAACAGAGGGCCTGCGGCTCCGGCAGGAAGAGCAGGAGAGGAAG
TGGCGAGCGCTCTCTCAGATGGCATCTGAACAGCTGAAGCGTTTTGATGAACGGAAGGAACTGAAGCGTCGTCAAGAATT
CCAGGACTTGAGGGAAATGATGGAGAAGAGCTCCAGAGAAGCCCTGGGGCAGCAAGAAAAGCTGAAAGCTGAGCATCGCC
ACAGAGCGGAGATTCTCAACCTGAAGCTGTGGGTGGCAGAGCAGCAGCGCCTGAAGCGGGTGGAGCAGGAGCGGCTGCGG
AGGGAGGAAGGCCAGGTCCGCCTGCGGAGCCTCTATGCCGCGCAGGAGGAGCTGCTGCACCTCAACCAGCAGCTGGACTC
CGTGGGCCAGCACAGAGACCCGAAGGTGGACCCGCGGAGCCGAGGCAACCAGCTGTGCGGCCTCATCTCGGGGCTCATTC
GGACCACCTCGGAGAACGGCTTTCCCACAGCAGAGGACCAAGCCTTGGCCGAGAGCGCGCTGCAACAAGTGCGGGACCTG
CTGAGGGACGCCAGGGCGTGTGAAGACAAGAGGAGGCAGGATGAAGAGGAGGCCCGAGTGAAGCGGCAAGAGGCACAGGT
GCAGCAGAGGCCAGAGGTCCACAACGAGTGCCCCGCTCCCAGCCAGGGCCCGGGAGGGAAACGGAGTGAAGACCTCCAGC
TGAAGGTACAAGACAGTACAATGCAGTGGTACCAGCAGCTGCAGGAGGCCTCCCGTCAGTGTGTGCTGGCCTTTGAGGGA
CTGGCCAGCAGCAAGGACAGCCAGGTCAAAAAGATAAAGATGGACCTCCAGAAGGCAGCCACTATCCCAGTGAGCCAGAT
CTCCACCAGCGCAGGCTCCCAGCTGAAGGAGATCTTCGACAAGATCCACAACCTGCTTTCTGGGAAACCTGTTCCATCTG
GTGGGCGCTCTGTGTCCGTCACACTGAATCCACAGGGCCTGGACTTTGTCCAGTACAAACTGGCAGAGAAGTTTGTGAAA
CAAGGAGAGGAGGAGGTGGCCTCTCACCATGAAGCTGCGTTCCCCATCGCCGCCGTAGCGTCGGGGATCTGGGAGCTGCA
CCCGAGGGTGGGGGACCTCATCTTGGCTCATCTGCACAAGAATTGTCCGTACTCTGTCCCACTCTACCCGGCTTTCAGGG
AGGGAATGGCTGTGGAAGACTACCAAAGAATGCTTGGCTACCAAGTGAAGGATTCCAAGGTGGAGCAGCAGGACAACTTT
CTGAAACGCATGTCCGGGATGATGCGTCTCTATGCTGCCATCATCCAGCTCCGGTGGCCATATGGAACTCGACAAGAGGT
TCACCCTCATGGCCTAAACCATGGCTGGCGCTGGTTGGCACAGATACTAAACATGGAGCCCCTGCCGGACGTGACGGCCA
CCCTCCTCTTGGACTTCTTAGAGGTGTGTGGGAATGCCCTCATGAAGCAGTATCAGGCCCAGTTCTGGAAGATGATGCTT
CTCATCAAAGAGGACTACTGCCCCAGGATTGAAGCCATTACAAGCCCGGGACAGATGGGGTCCTTCATACGCCTCAAGAG
GTTCTTGGAGGAATGTTTGCAGCGCAAGGAGGTTCCTGTCCCCAAGGGCTTTCTGACTTCCTCCTTCTGGCGTTCCTGA

Alignment

ORF - retro_mluc_171 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 91.94 %
• Parental protein coverage: 100. %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  MPSESRCWETLQALRSSDKGRLCYHRDWLLRGEDVLEECVSTPQLSSYAGWVVDHVLPHTQENLSPSETS
          MPSESRCWE.LQALRSSDKGRLCYHRD.LLRGEDV.EECVSTPQLSSYAGWVVDHVLPH.QE.LS.SET.
Retrocopy MPSESRCWESLQALRSSDKGRLCYHRDRLLRGEDVPEECVSTPQLSSYAGWVVDHVLPHAQETLSLSETP

Parental  TSSRSTSGLDQPSFVPKSPIRSLAFSPASPGTPATPGGTKGKHESQHTEPMLLQSSRGIKVEGCIRMYEL
          TSSRS.SGLDQPSFVPKSPIRSLAFSPASP..PATPGGTKGK.ESQ.TEPMLLQSSRGIK.EGCIR.YEL
Retrocopy TSSRSASGLDQPSFVPKSPIRSLAFSPASPRAPATPGGTKGKCESQPTEPMLLQSSRGIKMEGCIRTYEL

Parental  VHRMRGTEGLRLWQEEQERKVRALSEMASEQLKRFDERKELKHHKEFQDLREMMEKSSREALGQQEKLKA
          VHRM.GTEGLRL.QEEQERK.RALS.MASEQLKRFDERKELK...EFQDLREMMEKSSREALGQQEKLKA
Retrocopy VHRMKGTEGLRLRQEEQERKWRALSQMASEQLKRFDERKELKRRQEFQDLREMMEKSSREALGQQEKLKA

Parental  EHRHRAKIVNLKLWEAEQQRLKQVEQERLRREEGQVRLRSLYALQEELLHLNQQLDSVGQHRDLKVDLLA
          EHRHRA.I.NLKLW.AEQQRLK.VEQERLRREEGQVRLRSLYA.QEELLHLNQQLDSVGQHRD.KVD...
Retrocopy EHRHRAEILNLKLWVAEQQRLKRVEQERLRREEGQVRLRSLYAAQEELLHLNQQLDSVGQHRDPKVDP--

Parental  LRSRGNQLCGLISGIIRTTSENGFPTAEDQAVAESALQEMRDLLTDARACEDKRRQEEEEAQVKRQEAQM
          .RSRGNQLCGLISG.IRTTSENGFPTAEDQA.AESALQ..RDLL.DARACEDKRRQ.EEEA.VKRQEAQ.
Retrocopy -RSRGNQLCGLISGLIRTTSENGFPTAEDQALAESALQQVRDLLRDARACEDKRRQDEEEARVKRQEAQV

Parental  QQRPEVRKECPAPSQGPGGKRSEDLQVKVQDSTMQWYQQLQEASRQCVLAFEGLTSSKDSQVKKIKMDLQ
          QQRPEV..ECPAPSQGPGGKRSEDLQ.KVQDSTMQWYQQLQEASRQCVLAFEGL.SSKDSQVKKIKMDLQ
Retrocopy QQRPEVHNECPAPSQGPGGKRSEDLQLKVQDSTMQWYQQLQEASRQCVLAFEGLASSKDSQVKKIKMDLQ

Parental  KAATIPVSQISTIAGSKLKEIFDKIHNLLSGKPVQSGGRSVSVTLNPQGLDFVQYKLAEKFVKQGEEEVA
          KAATIPVSQIST.AGS.LKEIFDKIHNLLSGKPV.SGGRSVSVTLNPQGLDFVQYKLAEKFVKQGEEEVA
Retrocopy KAATIPVSQISTSAGSQLKEIFDKIHNLLSGKPVPSGGRSVSVTLNPQGLDFVQYKLAEKFVKQGEEEVA

Parental  SHHEAAFPIAVVASGIWELHPRVGDLILAHLHKNCPYSVPFYPAFREGMALEDYQRMLGYQVKDSKVEQQ
          SHHEAAFPIA.VASGIWELHPRVGDLILAHLHKNCPYSVP.YPAFREGMA.EDYQRMLGYQVKDSKVEQQ
Retrocopy SHHEAAFPIAAVASGIWELHPRVGDLILAHLHKNCPYSVPLYPAFREGMAVEDYQRMLGYQVKDSKVEQQ

Parental  DNFLKRMSGMMRLYAAIIQLRWPYGTRQEVHPHGLNHGWRWLAQILNMEPLSDVTATLLFDFLEVCGNAL
          DNFLKRMSGMMRLYAAIIQLRWPYGTRQEVHPHGLNHGWRWLAQILNMEPL.DVTATLL.DFLEVCGNAL
Retrocopy DNFLKRMSGMMRLYAAIIQLRWPYGTRQEVHPHGLNHGWRWLAQILNMEPLPDVTATLLLDFLEVCGNAL

Parental  MKQYQAQFWKMMLLIKEDYFPRIEAITSSGQMGSFIRLKQFLEKCLQRKEIPVPKGFLTSSFWRS
          MKQYQAQFWKMMLLIKEDY.PRIEAITS.GQMGSFIRLK.FLE.CLQRKE.PVPKGFLTSSFWRS
Retrocopy MKQYQAQFWKMMLLIKEDYCPRIEAITSPGQMGSFIRLKRFLEECLQRKEVPVPKGFLTSSFWRS

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Myotis lucifugus was not studied using RNA-Seq expression data.

ChIP-Seq

Myotis lucifugus was not studied using ChIP-Seq data.

EST

Myotis lucifugus was not studied using EST data.

TSS

Myotis lucifugus was not studied using FANTOM5 data.

Lab

retro_mluc_171 was not experimentally validated.

Homology

Retrocopy orthology:

Myotis lucifugus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 4 parental genes, and 5 retrocopies.

Species	Parental gene accession	Retrocopies number
Microcebus murinus	ENSMICG00000017640	1 retrocopy	retro_mmur_1261,
Myotis lucifugus	ENSMLUG00000007379	1 retrocopy	retro_mluc_171 ,
Mus musculus	ENSMUSG00000019715	2 retrocopies	retro_mmus_3505, retro_mmus_460,
Rattus norvegicus	ENSRNOG00000015237	1 retrocopy	retro_rnor_2323,